PDBsum entry 3duh Go to PDB code:  Tunnel analysis for: 3duh calculated with MOLE 2.0 PDB id 3duh Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   2 tunnels, coloured by tunnel radius 4 tunnels, coloured by tunnel radius 4 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.17 1.27 27.0 -1.58 -0.29 18.2 79 3 2 4 2 2 0 2   2 1.36 2.00 17.5 -0.07 0.15 1.9 57 0 0 2 2 3 2 1   3 1.11 1.61 19.7 -0.16 0.15 11.8 64 2 1 0 3 1 0 0   4 1.12 1.61 20.2 -0.35 0.02 13.9 64 2 2 0 4 2 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.