PDBsum entry 3dpp Go to PDB code:  Tunnel analysis for: 3dpp calculated with MOLE 2.0 PDB id 3dpp Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   7 tunnels, coloured by tunnel radius 7 tunnels, coloured by tunnel radius 7 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.16 1.16 21.5 -0.76 -0.38 9.6 84 3 1 2 3 0 2 0   2 1.15 1.15 29.6 -1.05 -0.38 14.5 85 4 3 1 4 0 2 0   3 1.15 1.15 37.3 -1.17 -0.37 20.7 85 4 4 3 5 0 1 0   4 1.21 1.18 68.4 -1.98 -0.41 27.8 81 12 7 1 8 2 1 0   5 1.19 1.17 68.6 -1.70 -0.40 25.2 82 9 7 1 8 2 2 0   6 1.15 1.20 17.8 -0.27 0.04 3.0 81 0 1 2 4 2 0 0  ALC 3 C 7 2.15 2.24 17.1 0.89 -0.08 4.3 83 0 2 1 6 0 1 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.