 |
PDBsum entry 3dp5
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Tunnel analysis for: 3dp5 calculated with  MOLE 2.0
|
PDB id
|
|
|
|
3dp5
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Tunnels calculated on whole structure |
|
Tunnels calculated excluding ligands
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
0 tunnels,
coloured by tunnel radius |
|
4 tunnels,
coloured by
tunnel radius
|
4 tunnels,
coloured as in
list below
|
|
|
|
|
|
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
|
|
|
|
|
|
|
Free R
|
|
|
|
|
|
|
Length
|
|
|
|
|
|
|
HPathy
|
|
|
|
|
|
|
HPhob
|
|
|
|
|
|
|
Polar
|
|
|
|
|
|
|
Rel Mut
|
|
|
|
|
|
|
Residue..type
|
|
|
|
|
|
|
Ligands
|
|
|
|
|
|
|
 |
Radius |
 |
1 |
 |
1.29 |
2.14 |
17.9 |
1.81 |
0.68 |
6.4 |
76 |
|
1 |
0 |
0 |
6 |
1 |
1 |
2 |
|
HEC 122 A
|
 |
|
2 |
 |
1.45 |
1.67 |
26.2 |
1.10 |
0.61 |
9.8 |
84 |
4 |
0 |
1 |
9 |
2 |
0 |
1 |
HEC 122 A
|
|
3 |
 |
1.28 |
2.15 |
26.2 |
1.52 |
0.57 |
3.6 |
85 |
2 |
0 |
1 |
7 |
1 |
0 |
1 |
HEC 122 A
|
 |
4 |
 |
1.23 |
2.25 |
26.3 |
1.32 |
0.55 |
8.0 |
84 |
3 |
0 |
1 |
8 |
1 |
0 |
1 |
HEC 122 A
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
 |
Residue-type_colouring |
 |
|
|
|
Positive
|
Negative
|
Neutral
|
Aliphatic
|
Aromatic
|
Pro & Gly
|
Cysteine
|
|
H,K,R
|
D,E
|
S,T,N,Q
|
A,V,L,I,M
|
F,Y,W
|
P,G
|
C
|
|
|
|
MOLE 2.0 program