spacer
spacer

PDBsum entry 3dle

Go to PDB code: 
Top Page protein ligands Protein-protein interface(s) pores links
Pore analysis for: 3dle calculated with MOLE 2.0 PDB id
3dle
Pores calculated on whole structure Pores calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
6 pores, coloured by radius 4 pores, coloured by radius 4 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.26 1.26 58.3 -1.52 -0.38 16.0 85 4 1 5 3 1 0 0  CSD 280 A
2 1.14 1.26 116.9 -0.94 -0.06 9.5 78 6 3 8 8 7 3 0  CSD 280 A
3 1.27 1.28 119.7 -2.02 -0.57 22.6 79 11 8 6 4 4 1 0  
4 1.71 3.13 144.6 -1.82 -0.43 20.0 79 12 8 6 7 6 1 0  CSD 280 A

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer