PDBsum entry 3dgd Go to PDB code:  Tunnel analysis for: 3dgd calculated with MOLE 2.0 PDB id 3dgd Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   12 tunnels, coloured by tunnel radius 14 tunnels, coloured by tunnel radius 14 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.19 1.19 26.5 -0.11 -0.19 9.0 94 2 1 5 6 0 0 0   2 1.38 1.98 27.9 -0.23 -0.36 7.1 96 2 1 7 6 0 0 0   3 1.34 2.31 29.8 -0.22 -0.27 9.1 96 3 1 7 6 0 0 0   4 1.19 1.19 29.9 -0.16 -0.16 10.5 93 4 1 5 7 0 0 0   5 1.33 2.31 30.9 -0.34 -0.22 11.6 95 4 1 7 7 0 0 0   6 1.33 2.31 31.2 -0.19 -0.24 9.1 97 3 1 8 6 0 0 0   7 1.37 1.92 31.4 -0.25 -0.28 9.1 95 4 1 7 7 0 0 0   8 1.34 2.33 32.3 -0.38 -0.24 11.7 96 4 1 8 7 0 0 0   9 1.34 2.31 42.5 -0.04 -0.32 7.2 97 3 1 7 7 0 0 0   10 1.34 2.31 43.9 0.07 -0.23 7.6 98 3 1 8 7 0 0 0   11 1.46 1.57 31.6 -0.87 -0.08 19.8 74 5 4 0 5 4 1 0  ACT 130 C ACT 133 C ZN 131 D 12 1.46 3.65 32.5 -0.94 0.08 23.4 75 5 4 0 6 3 0 0  ACT 130 C ACT 133 C ZN 131 D 13 1.47 1.58 33.3 -0.82 -0.22 16.6 70 2 4 0 4 5 1 0  ACT 130 C ACT 133 C 14 1.46 1.57 34.3 -0.96 -0.14 19.4 70 2 4 0 5 4 0 0  ACT 130 C ACT 133 C Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.