PDBsum entry 3dff Go to PDB code:  Tunnel analysis for: 3dff calculated with MOLE 2.0 PDB id 3dff Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   8 tunnels, coloured by tunnel radius 6 tunnels, coloured by tunnel radius 6 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.23 3.18 27.2 -1.33 0.22 24.6 72 4 1 0 4 2 1 0  MSE 59 A PG4 400 A 2 1.24 3.20 33.2 -0.99 0.15 21.2 76 5 1 2 3 2 0 0  MSE 59 A PG4 400 A 3 1.37 1.72 17.1 -0.14 -0.28 7.8 87 1 0 2 5 1 0 0   4 1.19 1.38 17.2 -0.09 -0.21 6.7 87 1 0 2 5 1 0 0   5 1.18 1.77 21.7 -0.32 -0.09 13.0 72 1 3 2 2 3 0 0   6 1.17 1.77 21.7 -0.42 -0.17 14.5 72 1 3 2 2 3 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.