PDBsum entry 3ddr

Pore analysis for: 3ddr calculated with

MOLE 2.0

PDB id

3ddr

Pores calculated on whole structure

Pores calculated excluding ligands

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12 pores, coloured by radius

10 pores, coloured by radius

10 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.27

1.26

30.7

-1.93

-0.61

19.5

90

3

2

7

2

2

1

0

2

1.26

1.33

40.2

-0.34

-0.05

4.6

89

2

1

8

4

3

1

0

HEM 200 D

3

1.39

1.50

55.3

-1.76

-0.51

15.8

89

5

8

10

3

2

1

0

4

1.22

1.30

56.7

-1.19

-0.42

13.8

86

3

3

6

3

3

2

0

5

1.26

1.27

168.6

-1.36

-0.41

13.7

83

5

11

16

7

8

4

0

6

1.15

1.17

196.1

-1.01

-0.35

13.5

83

12

8

13

11

10

3

0

HEM 200 D

7

1.22

1.38

30.9

-2.04

-0.66

19.5

90

3

2

7

2

2

1

0

8

1.24

1.31

34.4

-0.30

-0.06

3.9

89

1

1

6

3

3

1

0

HEM 200 C

9

1.16

1.28

45.2

-1.05

-0.30

10.3

80

2

2

3

2

3

2

0

10

1.27

1.27

168.9

-1.39

-0.41

13.4

83

5

11

16

7

8

4

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.