PDBsum entry 3dbb

Pore analysis for: 3dbb calculated with

MOLE 2.0

PDB id

3dbb

Pores calculated on whole structure

Pores calculated excluding ligands

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10 pores, coloured by radius

11 pores, coloured by radius

11 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

2.43

2.78

37.6

-1.04

-0.26

20.5

71

5

5

1

5

2

2

0

2

1.70

1.70

38.3

-2.16

-0.36

24.1

79

5

4

2

1

1

1

0

3

1.97

2.06

41.6

-0.71

-0.05

15.9

71

6

3

1

6

3

4

0

4

2.03

2.11

44.0

-0.39

-0.02

12.0

71

6

4

1

6

3

3

0

5

1.76

1.81

44.7

-2.24

-0.41

21.0

77

5

3

3

1

2

2

0

6

1.61

1.81

45.2

-1.19

-0.27

17.9

79

6

3

4

6

1

2

0

7

2.25

2.92

49.5

-1.11

-0.11

19.7

74

6

5

3

8

3

3

0

8

2.22

2.36

51.6

-2.33

-0.47

25.5

77

9

8

3

3

4

1

0

9

1.84

1.89

53.8

-0.60

-0.20

8.3

70

0

3

2

5

2

1

1

MLZ 701 B

10

1.68

1.87

60.7

-1.59

-0.35

19.7

79

10

5

6

6

2

3

0

11

2.80

2.98

61.3

-1.77

-0.33

18.4

78

5

5

5

4

4

2

2

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.