PDBsum entry 3dao Go to PDB code:  Tunnel analysis for: 3dao calculated with MOLE 2.0 PDB id 3dao Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   2 tunnels, coloured by tunnel radius 4 tunnels, coloured by tunnel radius 4 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.56 1.72 28.9 -0.74 -0.43 12.8 71 3 4 1 2 1 1 2  MSE 223 B 2 1.54 1.71 31.5 -0.95 -0.41 11.3 76 2 4 3 5 1 2 2  MSE 223 B CIT 265 B 3 1.57 1.73 46.7 -1.16 -0.42 13.1 74 3 6 4 3 3 1 2  MSE 223 B CIT 265 B 4 1.11 1.68 18.5 0.46 0.13 5.6 76 1 1 0 4 2 0 1  MSE 83 A Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.