PDBsum entry 3d9r Go to PDB code:  Pore analysis for: 3d9r calculated with MOLE 2.0 PDB id 3d9r Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   1 pore, coloured by radius 2 pores, coloured by radius 2 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 2.02 3.16 26.0 -0.05 0.14 7.4 80 1 2 1 2 3 2 0  MSE 70 D UNL 135 D 2 1.92 1.91 129.6 -0.98 -0.05 13.4 81 6 8 3 11 8 6 0  MSE 70 B UNL 135 B MSE 70 C UNL 135 C Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.