PDBsum entry 3d9d Go to PDB code:  Pore analysis for: 3d9d calculated with MOLE 2.0 PDB id 3d9d Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   4 pores, coloured by radius 15 pores, coloured by radius 15 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.76 1.94 25.3 -1.68 -0.48 22.4 85 6 0 2 1 1 0 0   2 3.01 3.29 37.7 -1.46 -0.56 18.2 90 7 2 4 2 0 0 0   3 1.35 1.59 41.9 -1.41 -0.31 18.8 80 6 3 3 7 1 0 0  FAD 500 B 4 1.32 1.53 57.1 0.47 0.19 7.3 80 4 4 5 14 2 2 0  FAD 500 C N6C 600 C 5 1.36 1.44 59.4 0.34 0.09 7.4 80 3 4 4 13 3 1 0  FAD 500 B N6C 600 B 6 1.81 1.81 68.3 0.29 0.14 10.1 78 3 6 6 16 4 1 0  FAD 500 B N6C 600 B GOL 700 B 7 1.34 1.52 72.4 -1.95 -0.38 21.9 80 11 4 6 9 1 1 0  FAD 500 C 8 1.28 1.28 74.8 -0.54 0.00 16.4 71 5 6 1 3 5 2 0  GOL 701 B 9 1.32 1.53 82.9 -1.75 -0.35 18.7 82 11 1 6 9 2 1 0  FAD 500 B FAD 500 C 10 1.35 1.56 86.8 -1.50 -0.36 24.8 79 15 11 2 10 2 1 0  FAD 500 C FAD 500 D 11 1.24 1.28 85.0 0.30 0.04 8.8 83 5 3 5 16 2 2 0  FAD 500 C N6C 600 C 12 1.30 1.54 86.4 -1.48 -0.40 24.0 79 15 10 2 10 2 1 0  FAD 500 B FAD 500 D 13 1.76 2.54 98.6 -0.48 -0.02 14.3 79 11 8 10 17 3 1 0  FAD 500 C N6C 600 C GOL 700 C 14 1.28 1.52 103.9 -1.70 -0.44 25.2 81 18 13 5 12 1 1 0  FAD 500 B FAD 500 D 15 1.25 1.66 126.5 -0.50 -0.10 14.6 81 12 7 10 19 3 1 0  FAD 500 C N6C 600 C GOL 700 C Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.