PDBsum entry 3d9b Go to PDB code:  Pore analysis for: 3d9b calculated with MOLE 2.0 PDB id 3d9b Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   9 pores, coloured by radius 9 pores, coloured by radius 9 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 2.60 2.60 34.2 -2.06 -0.65 16.1 86 5 3 7 3 1 1 0   2 2.21 4.61 44.4 -1.03 -0.34 11.8 83 4 3 8 2 4 0 0   3 2.10 2.70 61.1 -1.14 -0.36 10.4 82 5 2 8 5 5 1 0   4 2.14 3.13 70.5 -0.50 -0.13 10.3 80 2 4 6 3 6 1 0   5 1.22 1.42 71.1 1.49 0.50 2.4 70 2 0 1 10 8 3 0   6 2.09 2.71 74.3 -0.63 -0.32 8.3 80 4 2 8 5 6 1 0   7 2.13 3.09 83.3 -1.41 -0.52 12.8 86 4 6 12 1 5 1 0   8 1.25 1.44 93.2 0.61 0.08 5.3 80 1 3 4 12 8 2 0   9 1.21 1.49 128.0 0.65 0.33 7.5 74 2 3 5 10 11 2 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.