PDBsum entry 3d8s Go to PDB code:  Pore analysis for: 3d8s calculated with MOLE 2.0 PDB id 3d8s Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   2 pores, coloured by radius 2 pores, coloured by radius 2 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.60 1.81 26.9 -1.68 -0.44 27.8 79 3 4 1 4 1 1 0   2 1.40 2.62 29.2 -0.87 -0.04 21.6 81 4 4 1 6 2 1 0  GOL 254 A Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.