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PDBsum entry 3d6y
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Transcription regulator/DNA
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PDB id
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3d6y
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Generate full PROCHECK analyses
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PROCHECK summary for 3d6y
Ramachandran plot
PROCHECK statistics
1. Ramachandran Plot statistics
No. of
residues %-tage
------ ------
Most favoured regions [A,B,L] 227 89.0%*
Additional allowed regions [a,b,l,p] 26 10.2%
Generously allowed regions [~a,~b,~l,~p] 1 0.4%
Disallowed regions [XX] 1 0.4%*
---- ------
Non-glycine and non-proline residues 255 100.0%
End-residues (excl. Gly and Pro) 2
Glycine residues 8
Proline residues 12
----
Total number of residues 277
Based on an analysis of 118 structures of resolution of at least 2.0 Angstroms and R-factor no greater than 20.0 a good
quality model would be expected to have over 90% in the most favoured regions [A,B,L].
2. G-Factors
Average
Parameter Score Score
--------- ----- -----
Dihedral angles:-
Phi-psi distribution -0.30
Chi1-chi2 distribution -0.33
Chi1 only -0.12
Chi3 & chi4 0.44
Omega 0.54
0.05
=====
Main-chain covalent forces:-
Main-chain bond lengths 0.63
Main-chain bond angles 0.36
0.48
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OVERALL AVERAGE 0.22
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G-factors provide a measure of how unusual, or out-of-the-ordinary, a property is.
Values below -0.5* - unusual
Values below -1.0** - highly unusual
Important note: The main-chain
bond-lengths and bond angles are compared with
the Engh & Huber (1991) ideal values derived
from small-molecule data. Therefore, structures
refined using different restraints may show
apparently large deviations from normality.
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