PDBsum entry 3d5e Go to PDB code:  Tunnel analysis for: 3d5e calculated with MOLE 2.0 PDB id 3d5e Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   7 tunnels, coloured by tunnel radius 3 tunnels, coloured by tunnel radius 3 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.23 3.31 20.3 3.23 1.28 0.3 55 0 0 0 6 4 0 0   2 1.22 3.57 22.0 2.34 1.01 2.8 59 1 0 1 4 5 0 0   3 1.13 3.49 22.7 3.06 1.13 0.3 62 0 0 0 8 4 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.