PDBsum entry 3d4l Go to PDB code:  Pore analysis for: 3d4l calculated with MOLE 2.0 PDB id 3d4l Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   6 pores, coloured by radius 7 pores, coloured by radius 7 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.13 1.13 30.9 -1.74 -0.70 21.0 89 3 3 3 1 2 0 0  605 1521 B 2 1.79 4.02 41.3 -1.76 0.08 21.7 76 6 1 4 2 7 0 0  605 1521 B 3 1.33 1.33 66.2 -1.35 -0.11 20.7 80 6 4 4 4 5 0 0   4 1.17 1.17 31.8 -1.28 -0.62 17.2 90 4 5 4 3 2 0 0  605 1521 A 5 1.84 3.65 32.9 -2.10 -0.06 23.5 70 4 1 2 1 5 0 0   6 3.32 4.12 37.3 -1.52 -0.29 19.2 77 4 3 2 4 2 2 0  605 1521 A 7 1.19 1.19 124.4 -1.04 -0.21 12.2 76 6 4 6 4 10 3 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.