 |
PDBsum entry 3d4l
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Tunnel analysis for: 3d4l calculated with  MOLE 2.0
|
PDB id
|
|
|
|
3d4l
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Tunnels calculated on whole structure |
|
Tunnels calculated excluding ligands
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
10 tunnels,
coloured by tunnel radius |
|
7 tunnels,
coloured by
tunnel radius
|
7 tunnels,
coloured as in
list below
|
|
|
|
|
|
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
|
|
|
|
|
|
|
Free R
|
|
|
|
|
|
|
Length
|
|
|
|
|
|
|
HPathy
|
|
|
|
|
|
|
HPhob
|
|
|
|
|
|
|
Polar
|
|
|
|
|
|
|
Rel Mut
|
|
|
|
|
|
|
Residue..type
|
|
|
|
|
|
|
Ligands
|
|
|
|
|
|
|
 |
Radius |
 |
1 |
 |
1.26 |
1.26 |
16.2 |
-0.80 |
-0.36 |
11.7 |
72 |
|
1 |
2 |
2 |
2 |
3 |
0 |
0 |
|
|
 |
|
2 |
 |
1.33 |
1.33 |
19.2 |
-2.46 |
-0.54 |
13.8 |
82 |
2 |
0 |
4 |
1 |
1 |
0 |
0 |
|
|
3 |
 |
1.34 |
1.34 |
20.4 |
-2.68 |
-0.68 |
13.3 |
82 |
2 |
1 |
4 |
1 |
1 |
0 |
0 |
|
|
4 |
 |
1.20 |
1.20 |
21.8 |
-0.66 |
-0.09 |
11.1 |
73 |
1 |
2 |
3 |
2 |
3 |
0 |
0 |
|
|
5 |
 |
1.38 |
3.03 |
24.9 |
-1.28 |
-0.10 |
13.2 |
76 |
3 |
0 |
3 |
1 |
3 |
1 |
0 |
NAG 1520 A
|
|
6 |
 |
1.24 |
1.37 |
18.1 |
0.14 |
0.26 |
6.8 |
82 |
0 |
1 |
1 |
4 |
2 |
1 |
0 |
|
 |
7 |
 |
1.18 |
1.43 |
15.3 |
-0.53 |
-0.03 |
15.5 |
73 |
2 |
1 |
0 |
2 |
1 |
0 |
0 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
 |
Residue-type_colouring |
 |
|
|
|
Positive
|
Negative
|
Neutral
|
Aliphatic
|
Aromatic
|
Pro & Gly
|
Cysteine
|
|
H,K,R
|
D,E
|
S,T,N,Q
|
A,V,L,I,M
|
F,Y,W
|
P,G
|
C
|
|
|
|
MOLE 2.0 program