PDBsum entry 3d29 Go to PDB code:  Pore analysis for: 3d29 calculated with MOLE 2.0 PDB id 3d29 Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   30 pores, coloured by radius 30 pores, coloured by radius 30 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.54 1.64 62.1 -1.44 -0.49 20.2 83 3 6 5 2 3 1 0   2 1.37 1.41 111.5 -2.35 -0.50 29.1 79 14 13 7 5 5 0 0   3 1.44 1.42 123.4 -1.38 -0.31 19.8 76 10 14 7 7 9 3 0   4 1.86 1.87 130.9 -2.74 -0.54 31.4 79 17 15 8 3 6 0 0   5 1.39 1.41 146.7 -1.16 -0.28 17.5 77 14 8 11 12 11 2 0   6 1.44 2.36 144.6 -2.07 -0.34 24.3 78 22 11 7 6 7 3 0   7 1.34 1.35 155.3 -1.69 -0.41 21.7 82 15 14 12 14 6 0 0   8 1.34 1.47 154.8 -2.06 -0.45 23.9 80 14 16 13 6 9 1 0   9 1.60 2.79 162.4 -1.94 -0.32 25.6 75 24 12 9 10 11 2 0   10 1.36 1.38 174.7 -2.01 -0.45 24.0 82 17 16 13 11 7 0 0   11 1.97 2.12 182.0 -2.49 -0.50 26.6 78 20 11 11 6 8 0 0  HXD 4 a 12 1.29 1.31 195.5 -1.44 -0.27 20.0 78 21 12 14 17 11 2 0   13 1.39 1.46 199.1 -1.94 -0.46 21.4 82 18 14 15 9 9 0 0  HXD 4 d 14 1.42 1.48 210.0 -2.19 -0.46 23.1 85 23 12 20 7 8 0 0  HXD 4 a HXD 4 d 15 1.38 1.38 210.7 -2.41 -0.50 26.1 81 25 13 15 7 7 0 0  HXD 4 a HXD 4 d 16 1.79 1.86 218.4 -2.27 -0.49 24.1 81 20 16 16 7 10 0 0  HXD 4 d 17 1.51 1.57 229.3 -2.52 -0.49 25.8 84 25 14 21 5 9 0 0  HXD 4 a HXD 4 d 18 1.80 1.88 230.1 -2.71 -0.53 28.3 81 27 16 16 5 8 0 0  HXD 4 a HXD 4 d 19 1.68 2.77 239.2 -1.73 -0.33 20.6 78 24 12 17 13 14 2 0  HXD 4 d 20 1.85 1.84 245.9 -2.44 -0.47 25.2 83 27 14 19 8 7 2 0  HXD 4 a HXD 4 d 21 1.81 1.83 248.9 -2.37 -0.45 24.6 83 27 14 21 8 10 1 0  HXD 4 a HXD 4 d 22 1.46 1.49 250.1 -1.91 -0.32 21.8 81 29 10 22 11 13 2 0  HXD 4 a HXD 4 d 23 1.69 2.78 250.9 -2.10 -0.37 23.8 78 31 11 17 11 12 2 0  HXD 4 a HXD 4 d 24 1.23 1.22 250.5 -2.55 -0.48 27.5 80 32 16 15 8 6 2 0  HXD 4 a HXD 4 d 25 1.67 1.70 254.5 -2.09 -0.42 21.7 83 28 15 19 9 9 3 0  HXD 4 a HXD 4 d 26 1.38 1.45 261.1 -1.76 -0.36 21.1 80 28 13 20 14 13 2 0  HXD 4 a HXD 4 d 27 1.66 2.11 264.4 -2.06 -0.41 22.3 80 27 14 22 13 14 3 0  HXD 4 a HXD 4 d 28 1.42 1.98 275.3 -1.63 -0.28 18.9 80 33 11 20 15 13 5 0  HXD 4 a HXD 4 d 29 1.60 2.80 269.7 -1.91 -0.33 21.5 80 31 10 22 14 14 3 0  HXD 4 a HXD 4 d 30 1.61 2.80 266.7 -1.93 -0.33 21.7 80 31 10 20 14 11 4 0  HXD 4 a HXD 4 d Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.