PDBsum entry 3d1a Go to PDB code:  Pore analysis for: 3d1a calculated with MOLE 2.0 PDB id 3d1a Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   7 pores, coloured by radius 11 pores, coloured by radius 11 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.85 1.87 34.9 -0.68 -0.44 9.6 94 1 2 5 6 1 2 0   2 1.35 1.60 38.5 -0.84 -0.36 21.2 82 4 4 1 5 0 1 0   3 1.27 1.27 48.2 0.45 0.24 11.0 77 5 1 2 8 3 2 0  HEM 147 B 4 1.81 1.81 57.7 -1.16 -0.26 17.8 83 6 4 3 9 5 3 0   5 1.23 1.28 58.7 -1.36 -0.35 15.1 84 5 2 4 5 3 4 0   6 1.82 1.82 61.4 -1.32 -0.14 18.7 75 7 5 2 5 5 3 0   7 1.72 2.76 63.2 -1.36 -0.35 17.9 81 6 4 3 3 2 5 0   8 1.25 1.24 63.3 -0.43 0.02 16.0 76 7 3 3 13 5 1 0  HEM 147 B 9 1.19 1.32 79.8 -0.49 -0.08 12.5 79 6 1 6 13 5 3 0  HEM 147 B 10 2.05 2.24 106.2 -1.72 -0.39 24.3 83 10 4 5 6 0 2 0   11 1.05 2.84 50.7 1.88 0.83 5.7 69 3 1 0 17 4 0 0  HEM 142 C Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.