PDBsum entry 3cy3 Go to PDB code:  Tunnel analysis for: 3cy3 calculated with MOLE 2.0 PDB id 3cy3 Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   3 tunnels, coloured by tunnel radius 6 tunnels, coloured by tunnel radius 6 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.84 1.88 18.7 1.93 0.56 9.3 77 1 3 0 9 1 0 0  EDO 401 A JN5 501 A 2 1.82 1.85 22.6 0.77 0.26 12.4 74 2 3 0 5 2 1 0  EDO 401 A JN5 501 A 3 1.44 1.56 40.1 -0.58 -0.25 17.8 84 4 6 4 5 2 0 0  EDO 401 A JN5 501 A 4 1.25 2.18 17.8 0.42 -0.19 6.3 80 0 1 1 6 0 1 0   5 1.25 2.15 29.7 0.37 -0.06 12.5 77 2 2 1 7 1 0 0   6 1.17 1.33 18.0 -1.76 -0.31 29.0 77 4 4 0 1 2 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.