PDBsum entry 3cq8 Go to PDB code:  Tunnel analysis for: 3cq8 calculated with MOLE 2.0 PDB id 3cq8 Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   7 tunnels, coloured by tunnel radius 5 tunnels, coloured by tunnel radius 5 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.31 1.45 39.5 -1.70 -0.72 20.1 85 5 2 1 0 0 0 0  DG 104 P DA 113 P DA 7 T DA 8 T DG 9 T DC 10 T DA 11 T 2 1.30 1.44 44.2 -1.48 -0.55 16.2 76 6 1 1 0 1 1 0  DG 109 P DC 110 P DT 111 P DA 113 P DA 7 T DA 8 T DG 9 T DC 10 T 3 1.26 1.64 16.1 0.98 0.29 7.5 85 1 1 2 6 2 0 0   4 1.28 1.58 16.3 1.38 0.56 7.6 81 1 1 2 5 3 0 0   5 1.37 2.07 17.0 0.52 0.54 12.1 82 2 2 0 5 2 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.