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PDBsum entry 3cmd
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Tunnel analysis for: 3cmd calculated with  MOLE 2.0
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PDB id
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3cmd
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Tunnels calculated on whole structure |
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Tunnels calculated excluding ligands
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6 tunnels,
coloured by tunnel radius |
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6 tunnels,
coloured by
tunnel radius
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6 tunnels,
coloured as in
list below
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Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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1.21 |
1.21 |
16.7 |
-0.13 |
-0.46 |
9.2 |
80 |
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1 |
2 |
0 |
3 |
2 |
0 |
0 |
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2 |
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1.31 |
1.31 |
17.1 |
0.32 |
-0.19 |
6.1 |
86 |
2 |
1 |
1 |
6 |
0 |
0 |
0 |
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3 |
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1.32 |
1.31 |
24.0 |
-0.44 |
-0.37 |
11.8 |
83 |
2 |
2 |
1 |
5 |
0 |
0 |
0 |
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4 |
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1.32 |
1.31 |
25.9 |
-0.49 |
-0.11 |
13.9 |
80 |
2 |
2 |
1 |
5 |
1 |
0 |
0 |
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5 |
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1.24 |
1.39 |
15.3 |
-0.07 |
-0.44 |
8.8 |
84 |
1 |
2 |
0 |
3 |
1 |
0 |
0 |
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6 |
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1.26 |
1.38 |
18.0 |
-0.11 |
-0.48 |
8.1 |
80 |
1 |
2 |
0 |
3 |
2 |
0 |
0 |
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program