PDBsum entry 3clq

Pore analysis for: 3clq calculated with

MOLE 2.0

PDB id

3clq

Pores calculated on whole structure

Pores calculated excluding ligands

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without HETATM:

8 pores, coloured by radius

11 pores, coloured by radius

11 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.11

1.40

29.1

1.28

0.11

2.3

75

1

0

1

6

2

0

0

MSE 220 B MSE 262 B

2

2.35

2.53

33.3

-0.59

-0.24

19.5

80

1

5

2

5

1

0

0

3

1.11

1.38

46.8

0.81

0.09

10.4

73

2

1

1

10

2

0

0

MSE 208 B MSE 220 B MSE 262 B

4

1.37

2.51

46.6

-0.31

-0.19

10.1

80

2

1

3

4

3

1

1

MSE 158 B MSE 357 B MSE 449 B

5

1.16

3.61

49.3

0.77

0.15

9.9

73

1

1

3

12

2

1

0

MSE 208 B MSE 262 B

6

1.26

1.66

64.9

-0.47

-0.35

9.6

80

4

1

4

7

2

2

1

MSE 158 B MSE 208 B MSE 291 B MSE 357 B

7

1.17

1.30

68.0

0.96

0.14

2.6

83

0

2

2

16

2

2

0

MSE 373 A MSE 373 B

8

1.84

2.04

28.5

0.03

-0.14

7.6

75

2

1

2

3

3

1

1

MSE 158 C MSE 357 C MSE 449 C

9

2.24

2.61

52.3

-1.07

-0.37

20.6

84

1

7

3

8

1

1

0

10

1.86

1.86

53.6

-0.49

-0.23

11.5

85

4

1

5

5

3

1

1

PEG 4 C MSE 158 D MSE 357 D MSE 449 D

11

1.25

1.25

78.9

-0.04

-0.19

10.0

85

3

3

8

12

3

0

0

MSE 239 C MSE 166 D MSE 239 D MSE 449 D

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.