PDBsum entry 3clq Go to PDB code:  Tunnel analysis for: 3clq calculated with MOLE 2.0 PDB id 3clq Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   9 tunnels, coloured by tunnel radius 4 tunnels, coloured by tunnel radius 4 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.13 1.12 37.1 1.21 0.16 5.9 80 1 2 4 9 1 0 0  MSE 166 D MSE 208 D 2 1.13 1.51 38.5 -1.01 -0.34 16.8 83 2 2 3 5 2 0 0  MSE 208 D MSE 449 D 3 1.52 1.66 23.0 1.92 0.36 1.9 71 1 0 0 6 2 0 0  MSE 220 D MSE 262 D 4 1.29 1.30 16.3 -2.24 -0.42 30.1 90 4 2 2 2 0 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.