PDBsum entry 3cli Go to PDB code:  Tunnel analysis for: 3cli calculated with MOLE 2.0 PDB id 3cli Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   1 tunnel, coloured by tunnel radius 7 tunnels, coloured by tunnel radius 7 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.42 1.51 46.3 1.33 0.35 2.7 73 1 0 3 14 3 1 1  HEM 600 A 2 2.05 2.27 48.5 1.46 0.38 4.4 76 2 0 2 13 3 0 1  HEM 600 B 3 1.36 1.43 51.9 1.42 0.41 4.2 76 2 0 3 14 2 0 1  HEM 600 B 4 2.05 2.25 53.2 0.42 0.09 7.9 79 3 2 4 10 4 0 1  HEM 600 B 5 1.39 1.46 56.4 0.95 0.08 2.5 74 1 0 3 13 4 0 1  HEM 600 A 6 1.36 1.43 56.6 0.38 0.09 7.6 79 3 2 5 11 3 0 1  HEM 600 B 7 1.36 1.91 21.6 -0.01 -0.15 6.0 76 1 0 0 3 3 2 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.