PDBsum entry 3cis Go to PDB code:  Tunnel analysis for: 3cis calculated with MOLE 2.0 PDB id 3cis Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   8 tunnels, coloured by tunnel radius 6 tunnels, coloured by tunnel radius 6 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.16 2.71 16.0 -1.58 -0.18 28.1 82 4 1 1 1 0 0 0   2 1.43 1.96 18.1 -1.44 -0.16 29.7 82 6 2 1 1 0 0 0   3 1.23 2.70 20.2 -2.30 -0.46 22.1 80 3 1 4 1 0 1 0   4 1.46 1.95 22.5 -1.93 -0.34 25.3 81 5 2 4 1 0 1 0   5 1.43 1.91 24.9 -2.06 -0.50 23.1 86 5 2 3 1 0 0 0   6 1.43 1.67 27.2 -2.12 -0.48 26.3 86 5 2 3 1 0 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.