PDBsum entry 3cdb Go to PDB code:  Tunnel analysis for: 3cdb calculated with MOLE 2.0 PDB id 3cdb Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   7 tunnels, coloured by tunnel radius 5 tunnels, coloured by tunnel radius 5 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.10 1.10 30.6 -1.39 -0.66 14.2 86 3 1 4 4 1 1 0   2 1.10 1.10 39.8 -2.04 -0.66 22.3 83 6 4 4 2 1 1 0   3 1.14 2.13 15.8 -1.14 -0.02 2.2 64 0 0 2 1 2 3 0   4 1.17 2.40 27.3 -1.30 -0.39 20.4 87 2 3 4 3 1 0 0   5 1.20 2.94 17.9 3.46 1.16 2.5 75 1 0 0 9 0 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.