PDBsum entry 3cd0

Tunnel analysis for: 3cd0 calculated with

MOLE 2.0

PDB id

3cd0

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

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MOLEonline 2.0 manipulation
and
visualization
with HETATM:

without HETATM:

6 tunnels, coloured by tunnel radius

8 tunnels, coloured by tunnel radius

8 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.11

1.37

50.8

-0.97

-0.46

11.0

85

4

3

6

4

0

2

1

6HI 3 D

2

1.09

1.42

61.6

-0.58

-0.31

11.5

87

4

4

7

8

0

2

0

6HI 3 D

3

1.45

1.72

24.1

-2.00

-0.63

19.5

85

3

2

4

3

1

1

0

4

1.31

1.66

28.3

-1.24

-0.56

13.5

87

2

1

4

4

1

1

0

5

1.11

1.21

32.2

-1.08

-0.53

12.7

88

2

1

4

5

1

1

0

6

1.30

1.67

36.2

-2.19

-0.60

24.9

83

4

4

6

2

1

1

0

7

1.18

1.18

31.5

-1.64

-0.58

18.3

85

4

2

4

2

1

1

0

8

1.17

1.17

32.5

-1.50

-0.45

21.4

85

4

2

4

2

2

1

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.