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PDBsum entry 3ccv
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Tunnel analysis for: 3ccv calculated with  MOLE 2.0
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PDB id
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3ccv
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Tunnels calculated on whole structure |
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Tunnels calculated excluding ligands
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22 tunnels,
coloured by tunnel radius |
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22 tunnels,
coloured by
tunnel radius
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22 tunnels,
coloured as in
list below
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Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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1.21 |
1.21 |
105.3 |
-0.55 |
-0.80 |
4.4 |
90 |
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2 |
1 |
2 |
0 |
0 |
0 |
0 |
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G 13 0 C 14 0 C 15 0 A 16 0 G 17 0 C 18 0 U 19 0
G 20 0 A 519 0 A 520 0 U 522 0 C 523 0 A 1321 0 G
1337 0 U 1338 0 C 1366 0 A 1367 0 U 1368 0 A 1369
0 U 1371 0 A 1372 0 A 1732 0 A 1733 0 G 2046 0 C
2047 0 C 2061 0 A 2062 0 C 2087 0 C 2088 0 A 2089
0 G 2090 0 G 2091 0 U 2648 0 A 2649 0 U 2650 0 C
2651 0 G 2656 0 G 2657 0 C 2839 0 A 2840 0 A 2841
0 G 2842 0 MG 8048 0 SR 8973 0
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2 |
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1.22 |
1.22 |
106.4 |
-0.77 |
-0.77 |
7.1 |
86 |
4 |
0 |
1 |
0 |
0 |
0 |
0 |
U 1371 0 A 1372 0 A 1732 0 A 1733 0 G 2046 0 C
2047 0 C 2084 0 C 2086 0 C 2087 0 C 2088 0 A 2089
0 G 2090 0 G 2091 0 U 2648 0 A 2649 0 U 2650 0 C
2651 0 U 2652 0 A 2653 0 C 2654 0 U 2655 0 G 2656
0 G 2657 0 G 2658 0 U 2659 0 U 2669 0 G 2670 0 A
2812 0 G 2828 0 G 2829 0 U 2830 0 C 2839 0 A 2840
0 A 2841 0 G 2842 0 C 2844 0 G 2845 0 C 2846 0 G
2847 0 G 2848 0 U 2849 0
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3 |
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1.24 |
1.24 |
110.4 |
-0.80 |
-0.77 |
7.6 |
81 |
4 |
0 |
1 |
0 |
0 |
0 |
0 |
A 1372 0 G 1373 0 C 1374 0 A 1381 0 G 1382 0 U
1383 0 A 1393 0 C 1394 0 C 1396 0 C 1397 0 G 1398
0 A 1399 0 C 1400 0 G 1401 0 G 1402 0 G 1557 0 C
1558 0 A 1559 0 A 1716 0 C 1721 0 U 1722 0 C 1725
0 G 1726 0 G 1727 0 A 1732 0 A 1733 0 G 2045 0 G
2046 0 C 2047 0 C 2049 0 A 2089 0 G 2090 0 G 2091
0 U 2648 0 G 2656 0 G 2657 0 C 2737 0 G 2742 0 C
2839 0 A 2840 0 A 2841 0 G 2842 0
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4 |
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1.24 |
1.24 |
114.8 |
-0.52 |
-0.80 |
3.9 |
97 |
1 |
0 |
2 |
0 |
0 |
0 |
0 |
G 13 0 G 531 0 C 534 0 G 535 0 A 536 0 C 538 0 G
539 0 A 540 0 C 541 0 A 542 0 G 543 0 G 544 0 G
545 0 C 546 0 C 557 0 A 602 0 C 606 0 G 607 0 A
608 0 U 609 0 U 611 0 U 612 0 C 613 0 U 614 0 A
1367 0 U 1368 0 A 1369 0 U 1371 0 A 1372 0 A 1732
0 A 1733 0 G 2046 0 C 2047 0 A 2062 0 U 2063 0 C
2086 0 C 2087 0 C 2088 0 A 2089 0 G 2090 0 G 2091
0 U 2648 0 A 2649 0 U 2650 0 C 2651 0 G 2656 0 G
2657 0 C 2839 0 A 2840 0 A 2841 0 G 2842 0 MG
8048 0 NA 8557 0
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5 |
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1.21 |
1.21 |
126.6 |
-0.52 |
-0.80 |
4.0 |
91 |
1 |
0 |
1 |
0 |
0 |
0 |
0 |
G 836 0 U 837 0 C 838 0 C 839 0 C 842 0 C 847 0 C
848 0 C 849 0 U 850 0 C 851 0 G 1373 0 A 1375 0 G
1376 0 C 1377 0 G 1378 0 A 1693 0 A 1732 0 A 1733
0 A 1737 0 C 1738 0 C 1753 0 G 1756 0 U 1757 0 U
1758 0 A 1759 0 C 1769 0 U 1770 0 U 1817 0 C 1818
0 G 1820 0 A 1821 0 A 1822 0 G 1823 0 C 1824 0 U
1825 0 C 1975 0 U 2016 0 U 2017 0 A 2018 0 A 2019
0 C 2020 0 C 2021 0 A 2022 0 G 2023 0 G 2045 0 G
2046 0 A 2089 0 G 2090 0 G 2091 0 U 2648 0 G 2656
0 G 2657 0 C 2839 0 A 2840 0 A 2841 0 G 2842 0 MG
8064 0 SR 9007 0
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6 |
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1.22 |
1.21 |
133.5 |
-0.97 |
-0.78 |
7.1 |
91 |
4 |
1 |
4 |
0 |
0 |
0 |
0 |
U 1371 0 A 1372 0 A 1732 0 A 1733 0 G 2046 0 C
2047 0 C 2084 0 C 2086 0 C 2087 0 C 2088 0 A 2089
0 G 2090 0 G 2091 0 U 2648 0 A 2649 0 U 2650 0 C
2651 0 U 2652 0 A 2653 0 C 2654 0 U 2655 0 G 2656
0 G 2657 0 G 2658 0 U 2659 0 U 2669 0 G 2670 0 U
2671 0 C 2672 0 U 2673 0 G 2674 0 A 2675 0 C 2676
0 A 2677 0 G 2771 0 G 2772 0 C 2804 0 A 2805 0 U
2808 0 G 2810 0 A 2811 0 A 2812 0 C 2839 0 A 2840
0 A 2841 0 G 2842 0 C 2844 0 SR 8954 0
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7 |
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1.27 |
1.27 |
138.7 |
-0.78 |
-0.71 |
6.9 |
77 |
3 |
0 |
1 |
0 |
1 |
0 |
0 |
C 838 0 A 1732 0 A 1733 0 C 1735 0 G 1945 0 C
1946 0 G 1947 0 G 1948 0 G 1949 0 U 2004 0 G 2005
0 A 2007 0 U 2008 0 G 2045 0 G 2046 0 A 2089 0 G
2090 0 G 2091 0 A 2474 0 G 2540 0 U 2541 0 G 2611
0 A 2612 0 G 2613 0 C 2614 0 A 2616 0 G 2618 0
UR3 2619 0 U 2620 0 PSU 2621 0 A 2622 0 A 2624 0
C 2625 0 C 2626 0 G 2627 0 U 2628 0 C 2629 0 A
2635 0 C 2636 0 U 2640 0 G 2642 0 G 2643 0 C 2644
0 U 2645 0 G 2646 0 C 2647 0 U 2648 0 G 2656 0 G
2657 0 C 2839 0 A 2840 0 A 2841 0 G 2842 0 MG
8067 0 MG 8078 0 SR 8990 0
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8 |
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1.21 |
1.21 |
141.9 |
-0.65 |
-0.80 |
5.9 |
88 |
2 |
2 |
2 |
0 |
0 |
1 |
0 |
G 1235 0 U 1371 0 A 1372 0 A 1732 0 A 1733 0 G
2046 0 C 2047 0 A 2083 0 C 2084 0 C 2086 0 C 2087
0 C 2088 0 A 2089 0 G 2090 0 G 2091 0 U 2550 0 U
2557 0 G 2558 0 A 2569 0 G 2570 0 G 2578 0 U 2648
0 A 2649 0 U 2650 0 C 2651 0 U 2652 0 A 2653 0 C
2654 0 U 2655 0 G 2656 0 G 2657 0 A 2677 0 A 2678
0 G 2679 0 A 2680 0 A 2681 0 G 2683 0 A 2684 0 C
2685 0 C 2686 0 A 2703 0 C 2704 0 U 2705 0 C 2769
0 A 2800 0 A 2801 0 C 2802 0 C 2803 0 C 2804 0 A
2805 0 G 2809 0 A 2812 0 A 2813 0 C 2839 0 A 2840
0 A 2841 0 G 2842 0
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9 |
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1.24 |
1.25 |
141.2 |
-1.41 |
-0.60 |
14.2 |
83 |
9 |
1 |
5 |
3 |
1 |
0 |
0 |
A 466 0 G 467 0 A 476 0 A 497 0 A 498 0 G 499 0 G
514 0 C 838 0 U 845 0 A 1424 0 A 1427 0 C 1428 0
G 1441 0 A 1732 0 A 1733 0 C 1735 0 G 2045 0 G
2046 0 A 2089 0 G 2090 0 G 2091 0 A 2099 0 A 2100
0 G 2540 0 G 2611 0 A 2612 0 G 2613 0 C 2614 0 C
2644 0 U 2645 0 G 2646 0 C 2647 0 U 2648 0 G 2656
0 G 2657 0 C 2839 0 A 2840 0 A 2841 0 G 2842 0 MG
8067 0 MG 8078 0
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10 |
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1.22 |
1.22 |
143.0 |
-0.79 |
-0.80 |
8.0 |
86 |
4 |
3 |
2 |
0 |
0 |
1 |
0 |
C 1228 0 C 1229 0 A 1231 0 G 1235 0 U 1371 0 A
1372 0 A 1732 0 A 1733 0 G 2046 0 C 2047 0 A 2083
0 C 2084 0 C 2086 0 C 2087 0 C 2088 0 A 2089 0 G
2090 0 G 2091 0 C 2500 0 G 2501 0 C 2502 0 U 2512
0 U 2550 0 C 2551 0 C 2552 0 G 2573 0 G 2574 0 C
2575 0 A 2576 0 A 2577 0 G 2578 0 U 2648 0 A 2649
0 U 2650 0 C 2651 0 U 2652 0 A 2653 0 C 2654 0 U
2655 0 G 2656 0 G 2657 0 A 2677 0 A 2678 0 G 2679
0 A 2776 0 G 2777 0 G 2809 0 A 2812 0 A 2813 0 C
2839 0 A 2840 0 A 2841 0 G 2842 0
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11 |
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1.23 |
1.24 |
143.8 |
-0.51 |
-0.80 |
3.9 |
94 |
1 |
0 |
2 |
0 |
0 |
0 |
0 |
G 836 0 U 837 0 C 838 0 C 839 0 C 842 0 C 847 0 C
848 0 C 849 0 G 1373 0 A 1375 0 G 1376 0 C 1377 0
G 1378 0 U 1561 0 C 1562 0 A 1693 0 A 1732 0 A
1733 0 A 1737 0 C 1738 0 G 1739 0 U 1740 0 G 1756
0 C 1816 0 G 2045 0 G 2046 0 A 2089 0 G 2090 0 G
2091 0 U 2648 0 G 2656 0 G 2657 0 G 2730 0 G 2731
0 U 2732 0 U 2733 0 G 2740 0 A 2741 0 G 2742 0 A
2743 0 G 2744 0 U 2749 0 G 2750 0 C 2751 0 C 2752
0 C 2839 0 A 2840 0 A 2841 0 G 2842 0 G 2869 0 C
2870 0 G 2871 0 C 2881 0 G 2882 0 A 2883 0 G 2884
0 SR 9007 0
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12 |
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1.24 |
1.25 |
144.9 |
-0.59 |
-0.72 |
4.8 |
76 |
2 |
0 |
1 |
0 |
1 |
0 |
0 |
A 788 0 C 789 0 U 825 0 A 827 0 G 828 0 A 829 0 G
830 0 U 831 0 G 836 0 C 838 0 C 839 0 U 845 0 A
846 0 C 847 0 C 848 0 C 849 0 U 850 0 A 1406 0 A
1407 0 U 1408 0 C 1534 0 G 1535 0 C 1536 0 C 1537
0 U 1539 0 A 1642 0 C 1643 0 U 1645 0 G 1646 0 G
1647 0 G 1648 0 A 1682 0 G 1695 0 U 1696 0 G 1697
0 U 1698 0 C 1699 0 C 1700 0 A 1701 0 A 1732 0 A
1733 0 C 1735 0 G 1837 0 U 1838 0 G 2045 0 G 2046
0 A 2089 0 G 2090 0 G 2091 0 U 2615 0 C 2644 0 U
2645 0 G 2646 0 C 2647 0 U 2648 0 G 2656 0 G 2657
0 C 2839 0 A 2840 0 A 2841 0 G 2842 0 NA 8552 0 N
A 8569 0 SR 8902 0 SR 8937 0 SR 8941 0
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13 |
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1.16 |
1.16 |
151.0 |
-0.64 |
-0.79 |
5.4 |
102 |
3 |
1 |
6 |
0 |
0 |
0 |
0 |
G 13 0 C 14 0 A 16 0 G 17 0 U 522 0 G 1300 0 C
1301 0 G 1302 0 C 1303 0 G 1319 0 C 1320 0 A 1321
0 G 1322 0 G 1331 0 C 1332 0 U 1333 0 A 1345 0 U
1346 0 U 1347 0 A 1348 0 G 1349 0 U 1350 0 A 1367
0 U 1368 0 A 1369 0 U 1371 0 A 1372 0 A 1732 0 A
1733 0 G 2046 0 C 2047 0 G 2058 0 A 2060 0 C 2061
0 A 2062 0 C 2087 0 C 2088 0 A 2089 0 G 2090 0 G
2091 0 U 2648 0 A 2649 0 U 2650 0 C 2651 0 G 2656
0 G 2657 0 C 2839 0 A 2840 0 A 2841 0 G 2842 0 MG
8048 0 MG 8086 Y
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14 |
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1.21 |
1.22 |
155.5 |
-0.88 |
-0.73 |
8.8 |
78 |
5 |
1 |
1 |
0 |
1 |
0 |
0 |
A 767 0 U 768 0 C 769 0 C 770 0 G 771 0 G 772 0 A
773 0 C 838 0 U 845 0 U 866 0 A 867 0 G 868 0 G
869 0 U 883 0 C 884 0 G 887 0 U 888 0 C 889 0 C
890 0 A 1458 0 A 1459 0 G 1460 0 U 1461 0 C 1474
0 G 1475 0 A 1476 0 C 1477 0 U 1478 0 G 1479 0 A
1480 0 G 1481 0 A 1482 0 A 1732 0 A 1733 0 C 1735
0 G 1837 0 C 1862 0 G 1863 0 G 2045 0 G 2046 0 A
2089 0 G 2090 0 G 2091 0 A 2099 0 A 2100 0 C 2477
0 U 2478 0 G 2540 0 G 2611 0 A 2612 0 G 2613 0 C
2614 0 C 2644 0 U 2645 0 G 2646 0 C 2647 0 U 2648
0 G 2656 0 G 2657 0 C 2839 0 A 2840 0 A 2841 0 G
2842 0 MG 8067 0 MG 8078 0
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15 |
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1.27 |
1.27 |
156.5 |
-0.85 |
-0.80 |
8.9 |
85 |
4 |
4 |
2 |
0 |
0 |
1 |
0 |
U 1120 0 G 1121 0 G 1131 0 A 1132 0 A 1133 0 G
1223 0 G 1224 0 C 1225 0 G 1226 0 C 1227 0 C 1228
0 A 1230 0 A 1231 0 A 1232 0 G 1235 0 A 1236 0 C
1238 0 U 1371 0 A 1372 0 A 1732 0 A 1733 0 G 2046
0 C 2047 0 A 2083 0 C 2084 0 C 2086 0 C 2087 0 C
2088 0 A 2089 0 G 2090 0 G 2091 0 U 2550 0 C 2551
0 C 2552 0 A 2577 0 G 2578 0 U 2648 0 A 2649 0 U
2650 0 C 2651 0 U 2652 0 A 2653 0 C 2654 0 U 2655
0 G 2656 0 G 2657 0 A 2677 0 A 2678 0 G 2679 0 G
2809 0 A 2812 0 A 2813 0 C 2839 0 A 2840 0 A 2841
0 G 2842 0 MG 8018 0 G 90 9 C 91 9 G 92 9 C 95 9
C 96 9
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16 |
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1.20 |
1.20 |
166.1 |
-0.69 |
-0.70 |
7.5 |
73 |
7 |
1 |
1 |
1 |
3 |
0 |
0 |
A 114 0 U 115 0 G 116 0 A 117 0 G 118 0 A 119 0 A
131 0 A 132 0 A 767 0 U 768 0 C 769 0 C 770 0 G
771 0 G 772 0 A 773 0 C 774 0 C 838 0 U 845 0 A
867 0 G 868 0 G 869 0 U 883 0 C 884 0 G 887 0 U
888 0 C 889 0 C 890 0 C 1462 0 U 1463 0 C 1464 0
C 1474 0 G 1475 0 G 1481 0 A 1732 0 A 1733 0 C
1735 0 G 1837 0 G 2045 0 G 2046 0 A 2089 0 G 2090
0 G 2091 0 A 2099 0 A 2100 0 C 2477 0 U 2478 0 G
2540 0 G 2611 0 A 2612 0 G 2613 0 C 2614 0 C 2644
0 U 2645 0 G 2646 0 C 2647 0 U 2648 0 G 2656 0 G
2657 0 C 2839 0 A 2840 0 A 2841 0 G 2842 0 MG
8067 0 MG 8078 0 SR 8957 0
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17 |
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1.25 |
1.25 |
171.8 |
-0.64 |
-0.80 |
6.1 |
88 |
3 |
1 |
2 |
0 |
0 |
0 |
0 |
G 13 0 G 531 0 C 534 0 G 535 0 A 536 0 C 538 0 G
539 0 C 541 0 A 542 0 A 565 0 C 613 0 U 614 0 G
615 0 U 616 0 C 617 0 G 618 0 G 1076 0 G 1089 0 A
1090 0 U 1091 0 A 1092 0 G 1093 0 C 1105 0 A 1106
0 G 1258 0 A 1259 0 G 1260 0 A 1261 0 C 1262 0 C
1263 0 U 1264 0 G 1265 0 U 1266 0 C 1267 0 U 1285
0 A 1286 0 A 1287 0 A 1367 0 U 1368 0 A 1369 0 U
1371 0 A 1372 0 A 1732 0 A 1733 0 G 2046 0 C 2047
0 A 2062 0 U 2063 0 U 2078 0 G 2079 0 C 2086 0 C
2087 0 C 2088 0 A 2089 0 G 2090 0 G 2091 0 U 2648
0 A 2649 0 U 2650 0 C 2651 0 G 2656 0 G 2657 0 C
2839 0 A 2840 0 A 2841 0 G 2842 0 MG 8048 0
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18 |
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1.11 |
1.11 |
230.2 |
-0.64 |
-0.78 |
6.9 |
86 |
3 |
4 |
2 |
1 |
0 |
1 |
0 |
A 913 0 A 914 0 C 915 0 A 929 0 C 930 0 G 941 0 U
942 0 A 943 0 A 1020 0 G 1021 0 G 1034 0 G 1046 0
U 1047 0 G 1048 0 C 1049 0 C 1051 0 A 1058 0 G
1059 0 C 1060 0 C 1061 0 U 1062 0 G 1063 0 U 1064
0 G 1065 0 U 1066 0 C 1127 0 U 1128 0 C 1129 0 U
1130 0 G 1131 0 A 1231 0 A 1232 0 G 1235 0 A 1236
0 U 1237 0 C 1238 0 U 1371 0 A 1372 0 A 1732 0 A
1733 0 G 2046 0 C 2047 0 G 2068 0 A 2083 0 C 2084
0 C 2086 0 C 2087 0 C 2088 0 A 2089 0 G 2090 0 G
2091 0 C 2393 0 U 2492 0 C 2493 0 G 2524 0 G 2525
0 U 2550 0 C 2551 0 C 2552 0 A 2577 0 G 2578 0 U
2648 0 A 2649 0 U 2650 0 C 2651 0 U 2652 0 A 2653
0 C 2654 0 U 2655 0 G 2656 0 G 2657 0 A 2677 0 A
2678 0 G 2679 0 G 2809 0 A 2812 0 A 2813 0 C 2839
0 A 2840 0 A 2841 0 G 2842 0 C 91 9 G 92 9 A 93 9
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19 |
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1.29 |
2.79 |
16.2 |
0.63 |
-0.13 |
5.0 |
77 |
0 |
2 |
0 |
5 |
0 |
1 |
0 |
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20 |
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1.42 |
1.54 |
20.6 |
1.58 |
0.30 |
7.7 |
94 |
0 |
2 |
1 |
6 |
0 |
0 |
0 |
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21 |
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1.23 |
1.23 |
18.0 |
-0.40 |
-0.80 |
3.4 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
C 1892 0 C 1946 0 G 1951 0 A 1969 0 G 1970 0 G
1971 0
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22 |
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1.12 |
1.12 |
17.3 |
-0.79 |
-0.61 |
2.7 |
87 |
0 |
0 |
1 |
0 |
0 |
1 |
0 |
A 1166 0 G 1167 0 C 1168 0 U 1169 0 C 1179 0 A
1181 0 A 1192 0
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program