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PDBsum entry 3ccm
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Tunnel analysis for: 3ccm calculated with  MOLE 2.0
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PDB id
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3ccm
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Tunnels calculated on whole structure |
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Tunnels calculated excluding ligands
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16 tunnels,
coloured by tunnel radius |
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17 tunnels,
coloured by
tunnel radius
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17 tunnels,
coloured as in
list below
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Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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1.20 |
1.20 |
91.7 |
-0.60 |
-0.80 |
4.7 |
89 |
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2 |
0 |
1 |
0 |
0 |
0 |
0 |
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G 836 0 U 837 0 C 838 0 C 839 0 C 842 0 C 847 0 C
848 0 C 849 0 G 1373 0 A 1375 0 G 1376 0 C 1377 0
G 1378 0 A 1693 0 A 1732 0 A 1733 0 A 1737 0 C
1738 0 G 1739 0 G 1756 0 U 1757 0 U 1758 0 A 1759
0 A 1811 0 A 1815 0 C 1816 0 U 1817 0 C 1818 0 G
2045 0 G 2046 0 A 2089 0 G 2090 0 G 2091 0 U 2648
0 G 2656 0 G 2657 0 C 2752 0 G 2753 0 A 2840 0 A
2841 0 G 2842 0 SR 8965 0 SR 9007 0
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2 |
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1.19 |
1.19 |
99.4 |
-0.56 |
-0.80 |
4.2 |
92 |
2 |
0 |
2 |
0 |
0 |
0 |
0 |
G 13 0 C 14 0 C 15 0 A 16 0 G 17 0 C 18 0 U 19 0
G 20 0 A 519 0 A 520 0 U 522 0 C 523 0 A 1321 0 G
1337 0 U 1338 0 C 1366 0 A 1367 0 U 1368 0 A 1369
0 U 1371 0 A 1372 0 G 1373 0 A 1732 0 A 1733 0 G
2046 0 C 2061 0 A 2062 0 C 2087 0 C 2088 0 A 2089
0 G 2090 0 G 2091 0 U 2648 0 A 2649 0 U 2650 0 C
2651 0 G 2656 0 G 2657 0 A 2840 0 A 2841 0 G 2842
0 SR 8973 0
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3 |
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1.20 |
1.20 |
100.5 |
-0.68 |
-0.78 |
5.9 |
86 |
4 |
0 |
1 |
0 |
0 |
0 |
0 |
U 1371 0 A 1372 0 G 1373 0 A 1732 0 A 1733 0 G
2046 0 C 2084 0 C 2086 0 C 2087 0 C 2088 0 A 2089
0 G 2090 0 G 2091 0 U 2648 0 A 2649 0 U 2650 0 C
2651 0 U 2652 0 A 2653 0 C 2654 0 U 2655 0 G 2656
0 G 2657 0 G 2658 0 U 2659 0 U 2669 0 G 2670 0 A
2812 0 G 2829 0 U 2830 0 A 2840 0 A 2841 0 G 2842
0 C 2844 0 G 2845 0 C 2846 0 G 2847 0 G 2848 0 U
2849 0 G 2909 0
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4 |
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1.24 |
1.24 |
115.8 |
-0.75 |
-0.63 |
6.0 |
76 |
2 |
0 |
1 |
0 |
1 |
0 |
0 |
G 836 0 U 837 0 C 838 0 C 839 0 U 845 0 A 846 0 G
1373 0 A 1732 0 A 1733 0 C 1735 0 G 2045 0 G 2046
0 A 2089 0 G 2090 0 G 2091 0 A 2100 0 A 2103 0 A
2538 0 G 2540 0 U 2541 0 OMG 2588 0 U 2589 0 G
2616 0 G 2618 0 UR3 2619 0 U 2620 0 A 2637 0 G
2638 0 G 2639 0 C 2644 0 U 2645 0 G 2646 0 C 2647
0 U 2648 0 G 2656 0 G 2657 0 A 2840 0 A 2841 0 G
2842 0 NA 8552 0 SR 8902 0 SR 8937 0 SR 8990 0 SR
9006 0
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5 |
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1.15 |
1.15 |
113.8 |
-0.63 |
-0.79 |
5.2 |
92 |
2 |
0 |
2 |
0 |
0 |
0 |
0 |
G 13 0 C 14 0 G 531 0 C 534 0 G 535 0 A 536 0 C
538 0 G 539 0 U 612 0 C 613 0 U 614 0 G 615 0 U
616 0 C 617 0 G 618 0 C 1105 0 A 1106 0 A 1367 0
U 1368 0 A 1369 0 U 1371 0 A 1372 0 G 1373 0 A
1732 0 A 1733 0 G 2046 0 A 2062 0 U 2063 0 U 2078
0 G 2079 0 C 2086 0 C 2087 0 C 2088 0 A 2089 0 G
2090 0 G 2091 0 U 2648 0 A 2649 0 U 2650 0 C 2651
0 G 2656 0 G 2657 0 A 2840 0 A 2841 0 G 2842 0
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6 |
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1.24 |
1.24 |
120.1 |
-0.69 |
-0.67 |
5.5 |
76 |
2 |
0 |
1 |
0 |
1 |
0 |
0 |
G 836 0 U 837 0 C 838 0 C 839 0 U 845 0 A 846 0 G
1373 0 A 1732 0 A 1733 0 C 1735 0 G 1837 0 G 2045
0 G 2046 0 A 2089 0 G 2090 0 G 2091 0 A 2100 0 A
2103 0 C 2104 0 C 2105 0 C 2106 0 G 2285 0 G 2286
0 C 2287 0 U 2473 0 A 2474 0 C 2476 0 C 2477 0 A
2538 0 C 2629 0 A 2635 0 C 2636 0 A 2637 0 C 2644
0 U 2645 0 G 2646 0 C 2647 0 U 2648 0 G 2656 0 G
2657 0 A 2840 0 A 2841 0 G 2842 0 MG 8082 0 NA
8552 0 SR 8902 0 SR 8937 0
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7 |
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1.20 |
1.19 |
120.6 |
-0.55 |
-0.80 |
4.3 |
94 |
2 |
0 |
2 |
0 |
0 |
0 |
0 |
G 13 0 C 14 0 G 531 0 C 534 0 G 535 0 A 536 0 C
538 0 G 539 0 A 540 0 C 541 0 A 542 0 G 543 0 C
556 0 C 557 0 C 558 0 A 593 0 C 594 0 G 607 0 A
608 0 U 609 0 U 611 0 U 612 0 C 613 0 G 1093 0 A
1367 0 U 1368 0 A 1369 0 U 1371 0 A 1372 0 G 1373
0 A 1732 0 A 1733 0 G 2046 0 A 2062 0 U 2063 0 C
2086 0 C 2087 0 C 2088 0 A 2089 0 G 2090 0 G 2091
0 U 2648 0 A 2649 0 U 2650 0 C 2651 0 G 2656 0 G
2657 0 A 2840 0 A 2841 0 G 2842 0
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8 |
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1.20 |
1.21 |
120.5 |
-0.70 |
-0.78 |
6.1 |
99 |
3 |
0 |
4 |
0 |
0 |
0 |
0 |
G 13 0 C 14 0 A 16 0 G 17 0 U 522 0 G 1316 0 A
1317 0 A 1318 0 G 1319 0 C 1320 0 A 1321 0 G 1322
0 G 1323 0 U 1333 0 C 1334 0 C 1335 0 U 1336 0 G
1337 0 U 1338 0 G 1339 0 A 1367 0 U 1368 0 A 1369
0 U 1371 0 A 1372 0 G 1373 0 A 1732 0 A 1733 0 G
2046 0 A 2060 0 C 2061 0 A 2062 0 C 2087 0 C 2088
0 A 2089 0 G 2090 0 G 2091 0 U 2648 0 A 2649 0 U
2650 0 C 2651 0 G 2656 0 G 2657 0 A 2840 0 A 2841
0 G 2842 0 SR 9002 0 MG 8086 Y
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9 |
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1.20 |
1.20 |
130.4 |
-0.67 |
-0.79 |
6.0 |
88 |
3 |
2 |
2 |
0 |
0 |
1 |
0 |
G 1235 0 U 1371 0 A 1372 0 G 1373 0 A 1732 0 A
1733 0 G 2046 0 A 2083 0 C 2084 0 C 2086 0 C 2087
0 C 2088 0 A 2089 0 G 2090 0 G 2091 0 U 2550 0 G
2578 0 U 2648 0 A 2649 0 U 2650 0 C 2651 0 U 2652
0 A 2653 0 C 2654 0 U 2655 0 G 2656 0 G 2657 0 A
2677 0 A 2678 0 G 2679 0 A 2680 0 A 2681 0 G 2683
0 U 2705 0 A 2706 0 C 2769 0 G 2770 0 G 2771 0 G
2798 0 A 2799 0 A 2800 0 A 2801 0 C 2802 0 C 2803
0 C 2804 0 A 2805 0 G 2809 0 A 2840 0 A 2841 0 G
2842 0
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10 |
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1.17 |
1.17 |
136.4 |
-0.80 |
-0.80 |
7.9 |
86 |
3 |
3 |
2 |
0 |
0 |
1 |
0 |
A 1230 0 A 1231 0 G 1235 0 U 1371 0 A 1372 0 G
1373 0 A 1732 0 A 1733 0 G 2046 0 A 2083 0 C 2084
0 C 2086 0 C 2087 0 C 2088 0 A 2089 0 G 2090 0 G
2091 0 C 2498 0 U 2499 0 U 2550 0 C 2551 0 C 2552
0 A 2553 0 U 2554 0 C 2555 0 G 2572 0 G 2573 0 G
2574 0 C 2575 0 A 2576 0 A 2577 0 G 2578 0 U 2648
0 A 2649 0 U 2650 0 C 2651 0 U 2652 0 A 2653 0 C
2654 0 U 2655 0 G 2656 0 G 2657 0 A 2677 0 A 2678
0 G 2679 0 G 2809 0 A 2840 0 A 2841 0 G 2842 0 SR
8927 0
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11 |
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1.17 |
1.17 |
142.7 |
-1.63 |
-0.57 |
16.2 |
83 |
10 |
1 |
5 |
3 |
1 |
0 |
0 |
A 466 0 G 467 0 A 476 0 A 497 0 G 499 0 G 514 0 G
836 0 U 837 0 C 838 0 C 839 0 U 845 0 A 846 0 G
1373 0 A 1427 0 C 1428 0 A 1732 0 A 1733 0 C 1735
0 G 2045 0 G 2046 0 A 2089 0 G 2090 0 G 2091 0 A
2099 0 A 2100 0 C 2644 0 U 2645 0 G 2646 0 C 2647
0 U 2648 0 G 2656 0 G 2657 0 A 2840 0 A 2841 0 G
2842 0 NA 8552 0 SR 8902 0 SR 8937 0
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12 |
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1.25 |
1.25 |
142.8 |
-0.59 |
-0.70 |
4.8 |
76 |
2 |
0 |
1 |
0 |
1 |
0 |
0 |
A 788 0 C 789 0 U 825 0 A 827 0 G 828 0 U 831 0 U
835 0 G 836 0 U 837 0 C 838 0 C 839 0 A 846 0 C
847 0 C 848 0 C 849 0 U 850 0 G 1373 0 A 1406 0 A
1407 0 U 1408 0 C 1534 0 G 1535 0 C 1536 0 C 1537
0 U 1539 0 A 1642 0 C 1643 0 U 1645 0 G 1646 0 G
1647 0 G 1648 0 A 1682 0 G 1695 0 U 1696 0 G 1697
0 U 1698 0 C 1699 0 C 1700 0 A 1701 0 A 1732 0 A
1733 0 C 1735 0 G 1837 0 U 1838 0 G 2045 0 G 2046
0 A 2089 0 G 2090 0 G 2091 0 C 2644 0 U 2645 0 G
2646 0 C 2647 0 U 2648 0 G 2656 0 G 2657 0 A 2840
0 A 2841 0 G 2842 0 NA 8552 0 NA 8569 0 SR 8902 0
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13 |
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1.26 |
1.27 |
145.5 |
-0.61 |
-0.70 |
5.0 |
76 |
2 |
0 |
1 |
0 |
1 |
0 |
0 |
U 825 0 G 828 0 U 831 0 U 835 0 G 836 0 U 837 0 C
838 0 C 839 0 A 846 0 C 847 0 C 848 0 C 849 0 U
850 0 G 1373 0 G 1378 0 A 1379 0 U 1405 0 A 1406
0 A 1407 0 G 1546 0 A 1547 0 U 1548 0 C 1549 0 A
1550 0 C 1551 0 G 1636 0 A 1637 0 U 1638 0 U 1639
0 G 1695 0 G 1703 0 G 1704 0 C 1705 0 G 1706 0 G
1707 0 A 1710 0 A 1711 0 A 1712 0 G 1713 0 C 1714
0 A 1732 0 A 1733 0 C 1735 0 A 1797 0 C 1798 0 G
1799 0 G 1837 0 U 1838 0 G 2045 0 G 2046 0 A 2089
0 G 2090 0 G 2091 0 C 2644 0 U 2645 0 G 2646 0 C
2647 0 U 2648 0 G 2656 0 G 2657 0 A 2840 0 A 2841
0 G 2842 0 NA 8531 0 NA 8552 0 NA 8569 0 SR 8902 0
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14 |
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1.17 |
1.17 |
151.2 |
-0.71 |
-0.78 |
6.3 |
96 |
5 |
0 |
4 |
0 |
0 |
0 |
0 |
G 13 0 C 14 0 A 16 0 G 17 0 U 522 0 U 1279 0 A
1280 0 C 1281 0 G 1299 0 G 1300 0 C 1301 0 G 1302
0 C 1303 0 G 1319 0 C 1320 0 A 1321 0 G 1322 0 G
1331 0 C 1332 0 U 1333 0 A 1345 0 U 1346 0 U 1347
0 A 1348 0 G 1349 0 A 1367 0 U 1368 0 A 1369 0 U
1371 0 A 1372 0 G 1373 0 A 1732 0 A 1733 0 G 2046
0 A 2060 0 C 2061 0 A 2062 0 C 2087 0 C 2088 0 A
2089 0 G 2090 0 G 2091 0 U 2648 0 A 2649 0 U 2650
0 C 2651 0 G 2656 0 G 2657 0 A 2840 0 A 2841 0 G
2842 0 MG 8086 Y
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15 |
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1.26 |
1.25 |
160.2 |
-0.89 |
-0.69 |
8.6 |
78 |
6 |
1 |
1 |
0 |
1 |
0 |
0 |
A 767 0 U 768 0 C 769 0 C 770 0 G 771 0 G 772 0 A
773 0 G 836 0 U 837 0 C 838 0 C 839 0 U 845 0 A
846 0 U 866 0 A 867 0 G 868 0 G 869 0 U 883 0 G
887 0 U 888 0 C 889 0 G 1373 0 A 1458 0 A 1459 0
G 1460 0 U 1461 0 C 1474 0 G 1475 0 A 1476 0 C
1477 0 U 1478 0 G 1479 0 A 1732 0 A 1733 0 C 1735
0 G 1837 0 C 1862 0 G 1863 0 C 1872 0 G 2045 0 G
2046 0 A 2089 0 G 2090 0 G 2091 0 A 2100 0 A 2103
0 C 2477 0 U 2478 0 A 2538 0 C 2644 0 U 2645 0 G
2646 0 C 2647 0 U 2648 0 G 2656 0 G 2657 0 A 2840
0 A 2841 0 G 2842 0 NA 8552 0 SR 8902 0 SR 8937 0
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16 |
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1.26 |
1.25 |
168.6 |
-0.69 |
-0.69 |
6.8 |
81 |
5 |
2 |
1 |
2 |
1 |
0 |
0 |
U 134 0 A 767 0 U 768 0 C 769 0 C 770 0 G 771 0 G
772 0 A 773 0 C 774 0 G 836 0 U 837 0 C 838 0 C
839 0 U 845 0 A 846 0 A 867 0 G 868 0 G 869 0 U
883 0 G 887 0 U 888 0 C 889 0 G 1373 0 C 1462 0 U
1463 0 C 1464 0 A 1465 0 C 1466 0 C 1467 0 C 1469
0 C 1472 0 U 1473 0 C 1474 0 G 1475 0 A 1732 0 A
1733 0 C 1735 0 G 1837 0 G 2045 0 G 2046 0 A 2089
0 G 2090 0 G 2091 0 A 2100 0 A 2103 0 C 2477 0 U
2478 0 A 2538 0 C 2644 0 U 2645 0 G 2646 0 C 2647
0 U 2648 0 G 2656 0 G 2657 0 A 2840 0 A 2841 0 G
2842 0 NA 8552 0 SR 8902 0 SR 8937 0
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17 |
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1.21 |
2.13 |
19.1 |
1.77 |
0.40 |
9.6 |
85 |
0 |
2 |
0 |
7 |
1 |
0 |
0 |
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program