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PDBsum entry 3cc7
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Tunnel analysis for: 3cc7 calculated with  MOLE 2.0
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PDB id
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3cc7
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Tunnels calculated on whole structure |
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Tunnels calculated excluding ligands
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4 tunnels,
coloured by tunnel radius |
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24 tunnels,
coloured by
tunnel radius
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24 tunnels,
coloured as in
list below
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Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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1.16 |
1.18 |
89.1 |
-1.35 |
-0.77 |
12.6 |
86 |
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4 |
1 |
3 |
1 |
0 |
0 |
0 |
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A 466 0 G 467 0 U 468 0 A 476 0 U 488 0 G 500 0 G
501 0 A 502 0 G 503 0 G 504 0 C 505 0 G 506 0 A
509 0 U 510 0 G 512 0 A 513 0 G 514 0 C 842 0 A
843 0 A 844 0 A 882 0 A 1427 0 G 1688 0 A 1689 0
C 1692 0 A 1693 0 G 1694 0 MG 8011 0 SR 8925 0
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2 |
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1.15 |
1.15 |
95.0 |
-1.73 |
-0.73 |
17.5 |
82 |
7 |
2 |
4 |
2 |
0 |
0 |
0 |
A 466 0 G 467 0 U 468 0 A 476 0 A 495 0 A 498 0 G
499 0 G 514 0 C 842 0 A 843 0 A 844 0 A 882 0 A
1390 0 G 1391 0 A 1427 0 A 1434 0 G 1688 0 A 1689
0 C 1692 0 A 1693 0 G 1694 0 MG 8011 0
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3 |
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1.15 |
1.15 |
102.1 |
-1.22 |
-0.65 |
14.7 |
82 |
5 |
3 |
3 |
3 |
0 |
1 |
0 |
G 88 0 G 89 0 A 466 0 G 467 0 U 468 0 A 476 0 A
485 0 A 486 0 G 487 0 U 488 0 A 489 0 A 497 0 A
498 0 G 499 0 G 514 0 C 842 0 A 843 0 A 844 0 A
882 0 A 1427 0 G 1688 0 A 1689 0 C 1692 0 A 1693
0 G 1694 0 MG 8011 0
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4 |
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1.17 |
1.18 |
103.9 |
-0.37 |
-0.68 |
4.6 |
80 |
1 |
0 |
0 |
0 |
1 |
0 |
0 |
U 468 0 C 842 0 A 843 0 A 844 0 A 882 0 U 883 0 C
884 0 C 889 0 G 1688 0 A 1689 0 C 1692 0 A 1693 0
G 1694 0 G 1837 0 A 2100 0 A 2103 0 C 2104 0 C
2105 0 C 2106 0 G 2285 0 G 2286 0 C 2287 0 C 2472
0 U 2473 0 A 2474 0 C 2476 0 C 2477 0 U 2478 0 A
2538 0 U 2620 0 PSU 2621 0 C 2629 0 G 2630 0 G
2632 0 A 2635 0 C 2636 0 A 2637 0 C 2644 0 MG
8011 0 SR 8920 0
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5 |
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1.16 |
1.18 |
105.2 |
-0.86 |
-0.79 |
6.8 |
91 |
4 |
0 |
2 |
0 |
0 |
0 |
0 |
U 468 0 A 635 0 G 636 0 C 637 0 C 638 0 A 639 0 G
640 0 C 842 0 A 843 0 A 844 0 A 882 0 G 1302 0 C
1303 0 G 1319 0 C 1320 0 G 1331 0 C 1332 0 U 1333
0 A 1345 0 U 1346 0 A 1355 0 A 1356 0 A 1357 0 C
1360 0 C 1361 0 U 1362 0 G 1363 0 G 1364 0 G 1688
0 A 1689 0 C 1692 0 A 1693 0 G 1694 0 C 2056 0 MG
8011 0 MG 8049 0 NA 8554 0
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6 |
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1.20 |
1.20 |
122.7 |
-1.27 |
-0.72 |
12.3 |
86 |
6 |
1 |
3 |
2 |
0 |
0 |
0 |
C 31 0 G 41 0 U 43 0 A 49 0 U 63 0 G 64 0 C 65 0
C 85 0 A 86 0 C 101 0 A 102 0 C 103 0 A 104 0 C
443 0 C 444 0 C 461 0 A 462 0 A 466 0 G 467 0 U
468 0 A 476 0 G 479 0 C 480 0 G 514 0 C 842 0 A
843 0 A 844 0 A 882 0 A 1427 0 G 1688 0 A 1689 0
C 1692 0 A 1693 0 G 1694 0 MG 8011 0
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7 |
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1.17 |
1.17 |
126.1 |
-0.95 |
-0.75 |
8.5 |
91 |
6 |
0 |
3 |
0 |
0 |
0 |
0 |
A 16 0 G 17 0 U 468 0 A 520 0 A 540 0 C 541 0 G
543 0 G 544 0 G 545 0 C 546 0 C 557 0 A 602 0 C
606 0 G 607 0 A 608 0 U 609 0 G 610 0 U 611 0 A
635 0 G 636 0 C 637 0 C 638 0 A 639 0 G 640 0 C
842 0 A 843 0 A 844 0 A 882 0 A 1321 0 G 1322 0 A
1355 0 A 1356 0 A 1357 0 C 1360 0 C 1361 0 U 1362
0 G 1363 0 G 1364 0 G 1688 0 A 1689 0 C 1692 0 A
1693 0 G 1694 0 C 2056 0 MG 8011 0 MG 8049 0 NA
8557 0 MG 8086 Y
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8 |
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1.24 |
1.24 |
130.4 |
-0.90 |
-0.79 |
6.8 |
94 |
5 |
0 |
4 |
0 |
0 |
0 |
0 |
U 468 0 A 542 0 G 543 0 C 556 0 C 557 0 C 558 0 A
593 0 C 594 0 G 607 0 A 608 0 U 609 0 A 635 0 G
636 0 C 637 0 C 638 0 A 639 0 G 640 0 C 842 0 A
843 0 A 844 0 A 882 0 G 1093 0 C 1320 0 A 1321 0
G 1323 0 G 1324 0 G 1325 0 C 1326 0 G 1331 0 C
1332 0 U 1333 0 A 1355 0 A 1356 0 A 1357 0 C 1360
0 C 1361 0 U 1362 0 G 1363 0 G 1364 0 G 1688 0 A
1689 0 C 1692 0 A 1693 0 G 1694 0 C 2056 0 MG
8011 0 MG 8049 0 NA 8554 0
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9 |
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1.21 |
1.25 |
136.8 |
-0.78 |
-0.79 |
5.9 |
84 |
5 |
0 |
2 |
0 |
0 |
0 |
0 |
G 13 0 C 14 0 U 468 0 G 531 0 C 534 0 G 535 0 A
536 0 C 538 0 G 539 0 G 544 0 C 613 0 U 614 0 G
615 0 G 618 0 A 631 0 C 633 0 G 634 0 A 635 0 G
636 0 C 842 0 A 843 0 A 844 0 A 882 0 U 1359 0 G
1363 0 A 1367 0 G 1688 0 A 1689 0 C 1692 0 A 1693
0 G 1694 0 C 2056 0 U 2057 0 G 2058 0 U 2059 0 A
2060 0 C 2061 0 A 2062 0 U 2063 0 A 2095 0 A 2096
0 C 2098 0 A 2099 0 A 2100 0 U 2650 0 C 2651 0 MG
8011 0 MG 8049 0 NA 8554 0
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10 |
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1.16 |
1.16 |
140.0 |
-0.45 |
-0.72 |
4.8 |
83 |
1 |
0 |
0 |
1 |
1 |
0 |
0 |
U 468 0 U 825 0 G 828 0 G 830 0 U 831 0 C 839 0 C
842 0 A 843 0 A 844 0 U 845 0 A 846 0 C 847 0 C
848 0 U 850 0 A 882 0 G 1378 0 A 1379 0 U 1405 0
A 1406 0 A 1407 0 G 1546 0 A 1547 0 U 1548 0 C
1549 0 A 1550 0 G 1636 0 A 1637 0 U 1638 0 U 1639
0 G 1688 0 A 1689 0 C 1692 0 A 1693 0 G 1694 0 G
1703 0 G 1704 0 G 1706 0 G 1707 0 A 1710 0 A 1711
0 A 1712 0 G 1713 0 C 1714 0 A 1797 0 C 1798 0 G
1799 0 G 1837 0 U 1838 0 A 2100 0 C 2644 0 U 2645
0 G 2646 0 MG 8011 0 NA 8531 0 NA 8569 0 SR 8937 0
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11 |
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1.20 |
1.22 |
144.9 |
-0.58 |
-0.69 |
6.7 |
81 |
2 |
0 |
0 |
0 |
1 |
0 |
0 |
U 468 0 C 842 0 A 843 0 A 844 0 A 882 0 U 883 0 C
884 0 C 889 0 G 1688 0 A 1689 0 C 1692 0 A 1693 0
G 1694 0 G 1837 0 G 1945 0 C 1946 0 G 1947 0 G
1948 0 G 1971 0 U 1972 0 U 2004 0 G 2005 0 U 2008
0 G 2009 0 U 2012 0 A 2100 0 A 2103 0 A 2474 0 C
2477 0 U 2478 0 A 2538 0 G 2540 0 G 2616 0 G 2618
0 UR3 2619 0 U 2620 0 PSU 2621 0 A 2622 0 A 2624
0 C 2625 0 C 2626 0 G 2627 0 U 2628 0 A 2635 0 C
2636 0 U 2640 0 G 2642 0 G 2643 0 C 2644 0 U 2645
0 MG 8011 0 SR 8990 0
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12 |
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1.15 |
1.16 |
147.1 |
-1.43 |
-0.70 |
14.8 |
84 |
7 |
4 |
3 |
2 |
1 |
0 |
0 |
C 29 0 C 31 0 C 87 0 A 319 0 G 320 0 A 321 0 G
322 0 C 330 0 G 332 0 G 333 0 G 334 0 U 335 0 A
337 0 C 338 0 A 339 0 A 340 0 A 462 0 A 466 0 G
467 0 U 468 0 A 476 0 G 479 0 C 480 0 U 481 0 G
482 0 C 483 0 A 484 0 G 514 0 C 842 0 A 843 0 A
844 0 A 882 0 C 1342 0 A 1427 0 G 1688 0 A 1689 0
C 1692 0 A 1693 0 G 1694 0 MG 8011 0
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13 |
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1.21 |
1.25 |
154.9 |
-0.39 |
-0.72 |
4.3 |
80 |
1 |
0 |
0 |
0 |
1 |
0 |
0 |
U 468 0 C 842 0 A 843 0 A 844 0 A 882 0 U 883 0 C
884 0 C 889 0 C 1228 0 C 1229 0 A 1230 0 G 1688 0
A 1689 0 C 1692 0 A 1693 0 G 1694 0 G 1837 0 A
2100 0 A 2103 0 C 2477 0 U 2478 0 A 2486 0 U 2487
0 A 2497 0 C 2498 0 U 2499 0 U 2527 0 U 2528 0 A
2538 0 G 2540 0 U 2541 0 C 2542 0 A 2553 0 U 2554
0 C 2555 0 G 2573 0 G 2574 0 C 2575 0 U 2590 0 C
2591 0 G 2592 0 G 2603 0 A 2604 0 C 2608 0 UR3
2619 0 U 2620 0 C 2644 0 G 2777 0 MG 8011 0 SR
8919 0
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14 |
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1.17 |
1.17 |
158.8 |
-0.46 |
-0.72 |
4.9 |
83 |
2 |
0 |
0 |
1 |
1 |
0 |
0 |
U 468 0 G 833 0 G 834 0 U 835 0 G 836 0 C 839 0 C
842 0 A 843 0 A 844 0 U 845 0 A 846 0 A 882 0 G
1688 0 A 1689 0 C 1692 0 A 1693 0 G 1694 0 G 1751
0 C 1753 0 A 1821 0 A 1822 0 G 1823 0 C 1824 0 U
1825 0 C 1826 0 G 1827 0 G 1828 0 A 1829 0 U 1838
0 G 1849 0 U 1850 0 G 1884 0 A 1885 0 A 1886 0 U
1887 0 C 1888 0 C 1889 0 U 1890 0 A 2011 0 G 2013
0 G 2014 0 A 2015 0 U 2016 0 U 2017 0 A 2018 0 A
2019 0 C 2020 0 C 2021 0 A 2022 0 G 2023 0 A 2024
0 C 2026 0 A 2100 0 G 2617 0 G 2643 0 C 2644 0 U
2645 0 G 2646 0 MG 8011 0 SR 8937 0 SR 8943 0 SR
8944 0 SR 8998 0
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15 |
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1.19 |
1.24 |
155.6 |
-0.54 |
-0.74 |
6.0 |
81 |
2 |
2 |
0 |
1 |
1 |
0 |
0 |
U 468 0 A 788 0 C 789 0 A 790 0 A 791 0 U 825 0 A
827 0 G 828 0 A 829 0 G 830 0 U 831 0 C 839 0 C
842 0 A 843 0 A 844 0 U 845 0 A 846 0 C 847 0 C
848 0 U 850 0 A 882 0 A 1406 0 A 1407 0 U 1408 0
U 1539 0 G 1540 0 G 1541 0 G 1542 0 G 1543 0 U
1638 0 U 1639 0 C 1640 0 A 1641 0 A 1642 0 A 1682
0 G 1688 0 A 1689 0 C 1692 0 A 1693 0 G 1694 0 G
1695 0 U 1696 0 G 1697 0 U 1698 0 C 1699 0 C 1700
0 A 1701 0 A 1710 0 G 1795 0 G 1837 0 U 1838 0 A
2100 0 C 2644 0 U 2645 0 G 2646 0 MG 8011 0 NA
8569 0 SR 8937 0 SR 8941 0
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16 |
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1.18 |
1.19 |
171.8 |
-0.45 |
-0.75 |
4.5 |
94 |
1 |
0 |
0 |
1 |
0 |
0 |
0 |
U 468 0 G 787 0 A 788 0 C 789 0 U 825 0 A 827 0 G
828 0 A 829 0 G 830 0 U 831 0 C 839 0 C 842 0 A
843 0 A 844 0 U 845 0 A 846 0 C 847 0 C 848 0 U
850 0 A 882 0 A 1406 0 A 1407 0 U 1408 0 G 1490 0
G 1491 0 A 1493 0 U 1531 0 G 1532 0 G 1535 0 C
1536 0 C 1537 0 C 1575 0 G 1576 0 U 1577 0 C 1578
0 C 1613 0 G 1614 0 A 1615 0 A 1616 0 C 1617 0 A
1642 0 C 1643 0 C 1644 0 A 1661 0 C 1662 0 G 1663
0 A 1682 0 G 1688 0 A 1689 0 C 1692 0 A 1693 0 G
1694 0 G 1695 0 U 1696 0 G 1697 0 U 1698 0 C 1699
0 C 1700 0 A 1701 0 G 1837 0 U 1838 0 A 2100 0 C
2644 0 U 2645 0 G 2646 0 MG 8011 0 NA 8569 0 SR
8937 0 SR 8941 0
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17 |
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1.20 |
1.27 |
183.7 |
-0.38 |
-0.73 |
4.0 |
80 |
1 |
0 |
0 |
0 |
1 |
0 |
0 |
U 468 0 C 842 0 A 843 0 A 844 0 A 882 0 U 883 0 C
884 0 C 889 0 C 1049 0 G 1050 0 C 1051 0 G 1052 0
A 1058 0 G 1059 0 C 1060 0 C 1127 0 U 1128 0 C
1129 0 U 1130 0 G 1688 0 A 1689 0 C 1692 0 A 1693
0 G 1694 0 G 1837 0 A 2100 0 A 2103 0 C 2477 0 U
2478 0 A 2486 0 U 2487 0 A 2488 0 G 2489 0 A 2490
0 G 2491 0 U 2492 0 C 2493 0 G 2524 0 G 2525 0 U
2527 0 U 2528 0 G 2529 0 C 2530 0 A 2538 0 G 2540
0 U 2541 0 C 2542 0 C 2608 0 UR3 2619 0 U 2620 0
C 2644 0 MG 8011 0 NA 8562 0 G 78 9 U 79 9 U 82 9
G 83 9 C 91 9 G 92 9 A 93 9 G 94 9 C 95 9 C 96 9
U 97 9 C 98 9 U 99 9
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18 |
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1.15 |
1.16 |
185.3 |
-0.66 |
-0.73 |
6.9 |
87 |
3 |
2 |
2 |
2 |
1 |
0 |
0 |
U 468 0 U 794 0 G 795 0 G 814 0 U 825 0 G 828 0 G
830 0 U 831 0 C 839 0 C 842 0 A 843 0 A 844 0 U
845 0 A 846 0 C 847 0 C 848 0 U 850 0 A 882 0 G
1378 0 A 1379 0 A 1407 0 G 1688 0 A 1689 0 C 1692
0 A 1693 0 G 1694 0 A 1712 0 G 1713 0 G 1739 0 U
1740 0 G 1756 0 U 1757 0 U 1758 0 A 1759 0 C 1763
0 C 1764 0 G 1765 0 G 1777 0 A 1778 0 G 1780 0 G
1781 0 G 1782 0 A 1783 0 U 1784 0 A 1801 0 A 1811
0 G 1812 0 A 1815 0 C 1816 0 U 1817 0 G 1819 0 G
1837 0 U 1838 0 A 2100 0 C 2644 0 U 2645 0 G 2646
0 C 2752 0 MG 8011 0 NA 8569 0 SR 8937 0 SR 8965
0 SR 8971 0
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19 |
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1.20 |
1.28 |
186.0 |
-0.57 |
-0.72 |
6.2 |
80 |
2 |
3 |
1 |
0 |
2 |
0 |
0 |
U 468 0 C 842 0 A 843 0 A 844 0 A 882 0 U 883 0 C
884 0 C 889 0 U 1120 0 G 1121 0 C 1129 0 U 1130 0
G 1131 0 A 1132 0 A 1133 0 G 1135 0 U 1136 0 U
1220 0 G 1221 0 A 1222 0 G 1223 0 G 1224 0 C 1225
0 G 1226 0 C 1227 0 C 1228 0 A 1230 0 A 1232 0 U
1237 0 C 1238 0 G 1688 0 A 1689 0 C 1692 0 A 1693
0 G 1694 0 G 1837 0 G 2068 0 A 2100 0 A 2103 0 C
2477 0 U 2478 0 A 2486 0 U 2487 0 A 2488 0 G 2489
0 A 2490 0 G 2491 0 U 2492 0 G 2524 0 G 2525 0 U
2527 0 U 2528 0 G 2529 0 C 2530 0 A 2538 0 G 2540
0 U 2541 0 C 2542 0 C 2608 0 UR3 2619 0 U 2620 0
C 2644 0 MG 8011 0 MG 8018 0 NA 8562 0 SR 8958 0
C 91 9
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20 |
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1.31 |
1.32 |
15.5 |
-2.07 |
-0.53 |
25.5 |
81 |
3 |
0 |
1 |
1 |
0 |
0 |
0 |
C 2502 0 A 2503 0 A 2504 0 A 2517 0 C 2518 0
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21 |
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1.81 |
1.90 |
16.5 |
-2.20 |
-0.58 |
25.6 |
91 |
3 |
0 |
1 |
1 |
0 |
0 |
0 |
C 2502 0 A 2503 0 A 2504 0 G 2505 0
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22 |
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1.60 |
1.88 |
20.2 |
-2.05 |
-0.66 |
22.7 |
88 |
3 |
0 |
1 |
0 |
0 |
0 |
0 |
C 2502 0 A 2503 0 A 2504 0 G 2505 0 C 2510 0 A
2511 0
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23 |
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1.10 |
1.10 |
21.7 |
-0.71 |
-0.83 |
7.8 |
92 |
0 |
1 |
0 |
0 |
0 |
0 |
0 |
A 485 0 A 486 0 G 487 0 U 488 0 A 489 0 C 490 0 G
504 0 C 505 0 G 512 0
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24 |
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1.48 |
1.48 |
21.0 |
-1.72 |
-0.60 |
20.4 |
88 |
2 |
1 |
1 |
0 |
0 |
1 |
0 |
G 964 0 A 965 0 U 966 0 C 1004 0
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program