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PDBsum entry 3cc4
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Tunnel analysis for: 3cc4 calculated with  MOLE 2.0
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PDB id
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3cc4
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Tunnels calculated on whole structure |
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Tunnels calculated excluding ligands
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20 tunnels,
coloured by tunnel radius |
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19 tunnels,
coloured by
tunnel radius
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19 tunnels,
coloured as in
list below
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Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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1.19 |
1.19 |
89.1 |
-0.72 |
-0.82 |
4.4 |
93 |
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2 |
0 |
3 |
0 |
0 |
0 |
0 |
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U 10 0 A 11 0 U 12 0 G 13 0 C 14 0 C 523 0 A 524
0 G 525 0 U 526 0 U 527 0 G 528 0 G 529 0 C 530 0
G 531 0 A 1367 0 U 1368 0 A 1369 0 U 1371 0 A
1372 0 G 1373 0 A 1732 0 A 1733 0 G 2046 0 C 2047
0 C 2087 0 C 2088 0 A 2089 0 G 2090 0 G 2091 0 U
2648 0 A 2649 0 U 2650 0 C 2651 0 G 2656 0 G 2657
0 C 2839 0 A 2840 0 A 2841 0 G 2842 0 MG 8048 0
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2 |
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1.22 |
1.22 |
93.5 |
-0.59 |
-0.79 |
4.8 |
89 |
2 |
0 |
1 |
0 |
0 |
0 |
0 |
G 836 0 U 837 0 C 838 0 C 839 0 C 842 0 C 847 0 C
848 0 C 849 0 G 1373 0 A 1375 0 G 1376 0 C 1377 0
G 1378 0 A 1693 0 A 1732 0 A 1733 0 C 1735 0 A
1737 0 C 1738 0 G 1739 0 U 1740 0 G 1756 0 U 1757
0 U 1758 0 A 1759 0 A 1811 0 A 1815 0 C 1816 0 G
2045 0 G 2046 0 A 2089 0 G 2090 0 G 2091 0 U 2648
0 G 2656 0 G 2657 0 C 2751 0 C 2752 0 G 2753 0 C
2839 0 A 2840 0 A 2841 0 G 2842 0 SR 8965 0 SR
9007 0
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3 |
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1.21 |
1.21 |
95.6 |
-0.72 |
-0.79 |
6.3 |
89 |
2 |
1 |
1 |
0 |
0 |
0 |
0 |
U 1371 0 A 1372 0 G 1373 0 A 1732 0 A 1733 0 G
2046 0 C 2047 0 C 2084 0 C 2086 0 C 2087 0 C 2088
0 A 2089 0 G 2090 0 G 2091 0 U 2648 0 A 2649 0 U
2650 0 C 2651 0 U 2652 0 A 2653 0 C 2654 0 U 2655
0 G 2656 0 G 2657 0 G 2658 0 U 2659 0 G 2660 0 U
2661 0 G 2662 0 G 2668 0 U 2669 0 A 2812 0 G 2829
0 C 2839 0 A 2840 0 A 2841 0 G 2842 0 C 2844 0 C
2912 0 A 2913 0 A 2914 0
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4 |
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1.10 |
1.10 |
104.9 |
-0.72 |
-0.69 |
5.9 |
76 |
2 |
0 |
1 |
0 |
1 |
0 |
0 |
C 838 0 A 1732 0 A 1733 0 C 1735 0 G 2045 0 G
2046 0 A 2089 0 G 2090 0 G 2091 0 G 2099 0 A 2103
0 C 2104 0 C 2105 0 C 2106 0 G 2285 0 G 2286 0 C
2287 0 C 2472 0 U 2473 0 A 2474 0 G 2540 0 G 2611
0 A 2612 0 G 2613 0 C 2614 0 U 2620 0 PSU 2621 0
C 2629 0 G 2630 0 G 2632 0 A 2635 0 C 2636 0 A
2637 0 C 2644 0 U 2645 0 G 2646 0 C 2647 0 U 2648
0 G 2656 0 G 2657 0 C 2839 0 A 2840 0 A 2841 0 G
2842 0 MG 8067 0 MG 8078 0 SR 8920 0 NA 8552 B
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5 |
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1.20 |
1.20 |
117.2 |
-0.52 |
-0.81 |
3.7 |
95 |
1 |
0 |
3 |
0 |
0 |
0 |
0 |
G 13 0 C 14 0 A 536 0 C 538 0 G 539 0 A 540 0 C
541 0 A 542 0 G 543 0 G 544 0 G 545 0 C 546 0 C
557 0 A 602 0 C 606 0 G 607 0 A 608 0 U 609 0 U
611 0 U 612 0 C 613 0 A 1367 0 U 1368 0 A 1369 0
U 1371 0 A 1372 0 G 1373 0 A 1732 0 A 1733 0 G
2046 0 C 2047 0 A 2062 0 U 2063 0 C 2087 0 C 2088
0 A 2089 0 G 2090 0 G 2091 0 U 2648 0 A 2649 0 U
2650 0 C 2651 0 G 2656 0 G 2657 0 C 2839 0 A 2840
0 A 2841 0 G 2842 0 MG 8048 0 NA 8557 0
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6 |
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1.17 |
1.17 |
118.4 |
-0.59 |
-0.79 |
4.9 |
92 |
2 |
0 |
2 |
0 |
0 |
0 |
0 |
G 13 0 C 14 0 A 536 0 C 538 0 G 539 0 C 613 0 U
614 0 G 615 0 U 616 0 C 617 0 G 618 0 G 1076 0 C
1105 0 A 1106 0 G 1258 0 A 1259 0 A 1367 0 U 1368
0 A 1369 0 U 1371 0 A 1372 0 G 1373 0 A 1732 0 A
1733 0 G 2046 0 C 2047 0 A 2062 0 U 2063 0 U 2078
0 G 2079 0 C 2087 0 C 2088 0 A 2089 0 G 2090 0 G
2091 0 U 2648 0 A 2649 0 U 2650 0 C 2651 0 G 2656
0 G 2657 0 C 2839 0 A 2840 0 A 2841 0 G 2842 0 MG
8048 0
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7 |
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1.18 |
1.18 |
123.6 |
-0.65 |
-0.79 |
5.4 |
97 |
4 |
0 |
4 |
0 |
0 |
0 |
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G 13 0 C 14 0 C 15 0 A 16 0 G 17 0 U 522 0 G 1302
0 C 1303 0 G 1319 0 C 1320 0 A 1321 0 G 1322 0 G
1331 0 C 1332 0 U 1333 0 A 1345 0 U 1346 0 C 1366
0 A 1367 0 U 1368 0 A 1369 0 U 1371 0 A 1372 0 G
1373 0 A 1732 0 A 1733 0 G 2046 0 C 2047 0 C 2061
0 A 2062 0 C 2087 0 C 2088 0 A 2089 0 G 2090 0 G
2091 0 U 2648 0 A 2649 0 U 2650 0 C 2651 0 G 2656
0 G 2657 0 C 2839 0 A 2840 0 A 2841 0 G 2842 0 MG
8048 0 MG 8086 Y
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8 |
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1.25 |
1.26 |
126.3 |
-1.64 |
-0.67 |
16.2 |
83 |
10 |
1 |
5 |
3 |
0 |
0 |
0 |
A 466 0 G 467 0 A 476 0 U 488 0 A 489 0 A 497 0 G
514 0 U 840 0 A 1427 0 C 1428 0 A 1732 0 A 1733 0
G 2046 0 C 2056 0 A 2089 0 G 2090 0 G 2091 0 G
2092 0 C 2098 0 G 2099 0 G 2646 0 C 2647 0 U 2648
0 A 2649 0 G 2656 0 G 2657 0 C 2839 0 A 2840 0 A
2841 0 G 2842 0
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9 |
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1.20 |
1.20 |
135.2 |
-0.95 |
-0.79 |
10.0 |
86 |
4 |
3 |
2 |
0 |
0 |
1 |
0 |
U 1136 0 G 1138 0 C 1228 0 A 1231 0 G 1235 0 U
1371 0 A 1372 0 G 1373 0 A 1732 0 A 1733 0 G 2046
0 C 2047 0 A 2083 0 C 2084 0 C 2086 0 C 2087 0 C
2088 0 A 2089 0 G 2090 0 G 2091 0 U 2550 0 C 2551
0 C 2552 0 A 2576 0 A 2577 0 G 2578 0 U 2648 0 A
2649 0 U 2650 0 C 2651 0 U 2652 0 A 2653 0 C 2654
0 U 2655 0 G 2656 0 G 2657 0 G 2658 0 A 2677 0 A
2678 0 G 2679 0 A 2776 0 G 2777 0 A 2792 0 G 2809
0 A 2812 0 A 2813 0 C 2839 0 A 2840 0 A 2841 0 G
2842 0
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10 |
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1.21 |
1.22 |
137.9 |
-0.74 |
-0.79 |
6.8 |
88 |
3 |
2 |
2 |
0 |
0 |
1 |
0 |
G 1235 0 U 1371 0 A 1372 0 G 1373 0 A 1732 0 A
1733 0 G 2046 0 C 2047 0 A 2083 0 C 2084 0 C 2086
0 C 2087 0 C 2088 0 A 2089 0 G 2090 0 G 2091 0 U
2550 0 G 2578 0 U 2648 0 A 2649 0 U 2650 0 C 2651
0 U 2652 0 A 2653 0 C 2654 0 U 2655 0 G 2656 0 G
2657 0 G 2658 0 A 2677 0 A 2678 0 G 2679 0 A 2680
0 A 2681 0 U 2705 0 A 2706 0 C 2769 0 G 2770 0 G
2771 0 G 2798 0 A 2799 0 A 2800 0 A 2801 0 C 2802
0 C 2803 0 C 2804 0 A 2805 0 G 2809 0 A 2812 0 A
2813 0 C 2839 0 A 2840 0 A 2841 0 G 2842 0
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11 |
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1.22 |
1.22 |
141.4 |
-0.62 |
-0.72 |
5.0 |
76 |
2 |
0 |
1 |
0 |
1 |
0 |
0 |
A 788 0 C 789 0 U 825 0 A 827 0 G 828 0 A 829 0 G
830 0 U 831 0 G 836 0 U 837 0 C 838 0 C 839 0 U
845 0 A 846 0 C 847 0 C 848 0 C 849 0 U 850 0 A
1406 0 A 1407 0 U 1408 0 C 1534 0 G 1535 0 C 1536
0 C 1537 0 U 1539 0 A 1642 0 C 1643 0 U 1645 0 G
1646 0 G 1647 0 G 1648 0 A 1682 0 G 1695 0 U 1696
0 G 1697 0 U 1698 0 C 1699 0 C 1700 0 A 1701 0 A
1732 0 A 1733 0 C 1735 0 G 1837 0 U 1838 0 G 2045
0 G 2046 0 A 2089 0 G 2090 0 G 2091 0 U 2645 0 G
2646 0 C 2647 0 U 2648 0 G 2656 0 G 2657 0 C 2839
0 A 2840 0 A 2841 0 G 2842 0 NA 8569 0 SR 8902 0
SR 8937 0 SR 8941 0 NA 8552 B
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12 |
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1.20 |
1.20 |
144.9 |
-0.66 |
-0.72 |
5.4 |
76 |
2 |
0 |
1 |
0 |
1 |
0 |
0 |
C 838 0 A 1732 0 A 1733 0 C 1735 0 U 1977 0 A
1978 0 C 1982 0 U 1984 0 U 1985 0 G 1986 0 C 1987
0 C 1988 0 U 1996 0 A 1997 0 C 1999 0 G 2045 0 G
2046 0 A 2089 0 G 2090 0 G 2091 0 G 2099 0 A 2103
0 G 2540 0 OMU 2587 0 OMG 2588 0 U 2589 0 G 2611
0 A 2612 0 G 2613 0 C 2614 0 G 2616 0 G 2618 0
UR3 2619 0 U 2620 0 A 2637 0 G 2639 0 U 2640 0 C
2644 0 U 2645 0 G 2646 0 C 2647 0 U 2648 0 G 2656
0 G 2657 0 C 2839 0 A 2840 0 A 2841 0 G 2842 0 MG
8067 0 MG 8078 0 SR 8990 0 SR 9006 0 NA 8552 B
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13 |
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1.26 |
1.27 |
150.8 |
-0.88 |
-0.73 |
8.6 |
79 |
6 |
1 |
1 |
0 |
1 |
0 |
0 |
A 767 0 U 768 0 C 769 0 C 770 0 G 771 0 G 772 0 A
773 0 C 838 0 U 845 0 U 866 0 A 867 0 G 868 0 G
869 0 U 883 0 C 884 0 G 887 0 U 888 0 C 889 0 A
1458 0 A 1459 0 G 1460 0 U 1461 0 C 1474 0 G 1475
0 A 1476 0 C 1477 0 U 1478 0 G 1479 0 A 1732 0 A
1733 0 C 1735 0 G 1837 0 C 1862 0 G 1863 0 C 1872
0 G 2045 0 G 2046 0 A 2089 0 G 2090 0 G 2091 0 G
2099 0 A 2100 0 A 2103 0 C 2477 0 U 2478 0 G 2540
0 G 2611 0 A 2612 0 G 2613 0 C 2614 0 C 2644 0 U
2645 0 G 2646 0 C 2647 0 U 2648 0 G 2656 0 G 2657
0 C 2839 0 A 2840 0 A 2841 0 G 2842 0 MG 8067 0
MG 8078 0 NA 8552 B
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14 |
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1.26 |
1.27 |
166.1 |
-0.97 |
-0.78 |
9.8 |
86 |
6 |
2 |
3 |
0 |
0 |
0 |
0 |
A 1372 0 G 1373 0 C 1374 0 A 1381 0 G 1382 0 U
1383 0 A 1393 0 C 1394 0 C 1396 0 C 1397 0 G 1410
0 A 1411 0 G 1438 0 C 1545 0 G 1546 0 A 1547 0 U
1548 0 C 1549 0 C 1551 0 G 1552 0 C 1553 0 C 1564
0 C 1565 0 C 1566 0 G 1567 0 G 1568 0 U 1569 0 C
1680 0 G 1681 0 A 1685 0 A 1717 0 G 1718 0 G 1719
0 C 1720 0 C 1721 0 U 1722 0 C 1725 0 G 1726 0 G
1727 0 A 1732 0 A 1733 0 G 2045 0 G 2046 0 C 2047
0 C 2049 0 A 2089 0 G 2090 0 G 2091 0 U 2648 0 G
2656 0 G 2657 0 C 2839 0 A 2840 0 A 2841 0 G 2842
0
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15 |
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1.00 |
2.10 |
22.2 |
2.92 |
0.88 |
4.5 |
87 |
0 |
1 |
1 |
8 |
0 |
0 |
1 |
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16 |
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1.11 |
1.23 |
44.5 |
0.98 |
0.08 |
7.3 |
85 |
1 |
2 |
1 |
8 |
0 |
1 |
0 |
G 1163 0 U 1164 0 G 1165 0 A 1166 0 G 1167 0
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17 |
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1.25 |
3.12 |
20.9 |
-0.16 |
0.05 |
14.3 |
83 |
3 |
1 |
0 |
5 |
2 |
0 |
0 |
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18 |
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1.12 |
2.44 |
16.6 |
0.99 |
0.18 |
7.3 |
74 |
0 |
1 |
1 |
2 |
2 |
0 |
0 |
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19 |
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1.15 |
1.39 |
20.1 |
-0.12 |
0.13 |
10.7 |
82 |
1 |
1 |
1 |
5 |
2 |
0 |
0 |
U 263 0 G 264 0
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program