PDBsum entry 3c8d Go to PDB code:  Pore analysis for: 3c8d calculated with MOLE 2.0 PDB id 3c8d Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   18 pores, coloured by radius 18 pores, coloured by radius 18 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 2.81 2.91 33.3 -2.06 -0.55 22.1 78 6 4 3 1 2 1 0  CIT 502 C 2 1.78 3.20 39.6 -2.83 -0.57 35.1 79 6 3 1 2 0 1 0   3 1.28 1.31 54.4 -1.18 -0.35 15.8 73 6 4 1 2 4 1 1   4 1.37 2.57 56.1 -2.08 -0.37 24.3 76 10 3 2 2 3 1 0   5 1.33 1.33 58.1 -1.60 -0.49 21.1 80 8 7 3 3 2 1 1  CIT 501 B 6 1.30 1.30 60.7 -1.21 -0.31 20.8 77 10 6 0 7 2 2 1   7 1.49 2.08 61.3 -1.63 -0.30 24.5 79 10 7 3 7 2 1 0  CIT 501 B 8 1.24 1.38 65.7 -1.80 -0.33 25.2 77 11 5 3 5 3 1 0   9 1.19 1.71 66.9 -1.37 -0.40 12.9 83 4 3 7 3 1 1 1   10 1.25 1.37 69.3 -1.20 -0.20 21.9 80 9 3 3 6 1 2 1   11 1.40 3.92 70.0 -1.50 -0.19 22.2 79 9 1 3 5 1 3 1   12 1.33 1.73 79.7 -2.56 -0.43 35.5 83 10 8 3 5 1 1 0   13 1.31 1.73 91.3 -2.55 -0.63 27.0 77 7 7 6 3 1 1 0   14 2.39 2.98 96.8 -2.27 -0.51 24.8 83 8 8 10 5 2 1 0   15 1.23 1.74 104.3 -1.78 -0.28 21.2 83 8 3 6 6 1 2 0   16 1.20 1.72 107.1 -1.39 -0.29 19.2 84 9 5 7 7 1 1 0   17 1.23 1.67 115.4 -1.61 -0.38 18.4 79 8 6 8 5 4 1 0   18 1.30 1.67 122.5 -1.84 -0.36 20.5 82 10 7 12 7 3 2 1   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.