spacer
spacer

PDBsum entry 3bns

Go to PDB code: 
Top Page dna_rna metals tunnels links
Tunnel analysis for: 3bns calculated with MOLE 2.0 PDB id
3bns
Tunnels calculated on whole structure Tunnels calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
3 tunnels, coloured by tunnel radius 3 tunnels, coloured by tunnel radius 3 tunnels, coloured as in
list below
Tunnels
Length
Hydropathy
Hydrophobicity
Polarity
Mutability
Residue..type
Ligands
Radius
1 1.72 14.5 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  10 C A,12 C A,14 G B,15 C B,16 A B,23 C C,24 K C,
1 G D,2 C D
2 1.48 24.9 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  10 C A,11 5BU A,12 C A,6 C B,7 A B,8 C B,14 G B,
15 C B,16 A B,23 C C,24 K C,1 G D,2 C D
3 1.49 28.5 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  8 A A,9 C A,10 C A,11 5BU A,12 C A,9 C B,10 5BU B,
11 C B,14 G B,15 C B,16 A B,23 C C,24 K C,1 G D,2
C D

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program and visualized using Pymol 0.97rc.
spacer
spacer