PDBsum entry 3bnh Go to PDB code:  Tunnel analysis for: 3bnh calculated with MOLE 2.0 PDB id 3bnh Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   0 tunnels, coloured by tunnel radius 8 tunnels, coloured by tunnel radius 8 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.55 1.89 25.2 -0.10 0.13 13.2 73 2 3 2 5 4 0 0   2 1.38 1.38 25.6 0.24 0.12 11.2 72 2 2 2 5 4 0 0   3 1.53 1.70 47.3 0.06 0.28 13.7 80 5 1 3 8 3 0 1  HEM 511 A 4 1.37 1.36 47.7 0.07 0.28 13.7 80 5 0 3 8 3 0 1  HEM 511 A 5 1.51 1.70 59.5 -0.06 0.29 14.1 79 6 1 3 8 4 1 2  HEM 511 A HEM 512 A HEM 513 A Y1 516 A 6 1.36 1.36 59.9 -0.06 0.25 13.9 79 6 0 3 8 4 1 2  HEM 511 A HEM 512 A HEM 513 A Y1 516 A 7 1.55 1.89 73.8 -0.01 0.34 14.8 73 7 1 3 11 7 2 4  NO2 1 A HEM 510 A HEM 511 A HEM 512 A 8 1.37 1.36 74.2 0.04 0.32 14.4 73 7 0 3 11 7 2 4  NO2 1 A HEM 510 A HEM 511 A HEM 512 A Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.