PDBsum entry 3bjs Go to PDB code:  Tunnel analysis for: 3bjs calculated with MOLE 2.0 PDB id 3bjs Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   7 tunnels, coloured by tunnel radius 5 tunnels, coloured by tunnel radius 5 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.29 1.33 34.1 -0.54 0.08 19.6 85 7 0 1 3 2 0 1   2 1.29 1.33 38.7 -1.20 -0.18 21.7 81 7 2 1 2 2 1 1   3 1.07 2.23 35.7 -1.53 -0.50 17.0 79 3 4 2 3 2 0 1   4 1.36 1.37 17.2 0.11 -0.35 5.0 78 0 2 0 1 1 1 0   5 1.13 1.62 17.4 -0.26 0.02 16.3 80 1 2 0 5 1 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.