PDBsum entry 3bfd

Pore analysis for: 3bfd calculated with

MOLE 2.0

PDB id

3bfd

Pores calculated on whole structure

Pores calculated excluding ligands

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8 pores, coloured by radius

8 pores, coloured by radius

8 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.81

2.28

34.7

0.92

0.37

2.7

79

1

1

3

7

2

2

0

2

1.93

2.36

46.2

-2.08

-0.59

18.4

81

5

3

3

1

0

1

0

3

1.61

1.86

52.9

0.29

0.11

7.9

81

3

2

3

10

2

2

0

4

2.51

2.70

68.8

-2.27

-0.32

14.3

82

4

4

10

0

3

2

0

CAC 4 D

5

2.23

2.21

78.6

-2.24

-0.39

19.2

82

6

5

9

1

3

1

0

CAC 4 D

6

1.51

1.67

30.5

0.72

0.44

5.9

78

2

1

1

6

2

1

0

7

1.77

2.19

40.4

0.44

0.09

2.8

79

0

2

3

8

2

2

0

8

1.52

1.63

42.4

-0.09

0.12

5.5

80

2

2

3

6

2

1

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.