PDBsum entry 3bef

Tunnel analysis for: 3bef calculated with

MOLE 2.0

PDB id

3bef

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

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MOLEonline 2.0 manipulation
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visualization
with HETATM:

without HETATM:

6 tunnels, coloured by tunnel radius

6 tunnels, coloured by tunnel radius

6 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.27

1.54

27.4

-0.02

0.04

13.2

89

3

1

1

6

1

0

0

2

1.26

1.39

28.5

0.01

0.05

11.6

82

3

1

1

6

2

1

0

3

1.26

1.39

28.8

-0.29

0.10

12.7

80

4

1

1

6

3

0

0

4

1.15

1.15

19.2

-0.25

-0.08

12.3

61

1

3

2

1

4

2

1

5

1.29

1.29

17.3

-0.29

-0.18

12.6

60

0

3

2

1

4

2

1

6

1.24

1.94

23.7

0.11

0.04

9.7

82

2

1

1

6

2

1

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.