spacer
spacer

PDBsum entry 3bc3

Go to PDB code: 
Top Page protein ligands Protein-protein interface(s) pores links
Pore analysis for: 3bc3 calculated with MOLE 2.0 PDB id
3bc3
Pores calculated on whole structure Pores calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
4 pores, coloured by radius 5 pores, coloured by radius 5 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.60 1.86 33.2 -0.68 -0.46 11.9 84 2 3 2 3 0 1 0  OPT 300 A
2 1.79 3.60 33.5 -1.38 -0.61 14.1 79 1 4 3 0 0 1 1  
3 1.47 1.51 38.3 -0.39 -0.23 10.6 72 2 4 1 2 3 0 0  OPT 300 A
4 1.43 1.50 43.4 -1.24 -0.44 17.0 79 2 6 3 4 2 1 0  OPT 300 A
5 2.22 2.30 65.5 -0.70 -0.29 6.8 75 3 2 4 6 2 1 0  CSD 25 B OPT 400 B

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer