PDBsum entry 3b9d Go to PDB code:  Tunnel analysis for: 3b9d calculated with MOLE 2.0 PDB id 3b9d Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   1 tunnel, coloured by tunnel radius 3 tunnels, coloured by tunnel radius 3 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.22 1.45 33.9 -0.43 0.38 10.7 66 2 2 0 4 6 1 0  NAG 1 B NAG 2 B NAG 3 B 2 1.17 1.44 34.5 -0.38 0.35 10.2 67 3 3 0 4 6 1 0  NAG 1 B NAG 2 B NAG 3 B 3 1.17 1.43 38.5 -0.36 0.29 10.6 71 3 3 0 5 6 1 0  NAG 2 B NAG 3 B NAG 4 B Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.