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PDBsum entry 3b6h
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Top Page protein ligands Protein-protein interface(s) pores links
Pore analysis for: 3b6h calculated with MOLE 2.0 PDB id
3b6h
Pores calculated on whole structure Pores calculated excluding ligands
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7 pores, coloured by radius 12 pores, coloured by radius 12 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.74 1.95 34.6 -2.01 -0.35 25.9 78 6 4 4 5 1 2 0  
2 1.73 1.88 46.4 -1.01 -0.08 23.6 75 13 2 1 6 1 1 0  
3 1.29 1.34 28.0 -1.80 -0.22 19.3 83 5 1 4 3 3 1 0  MXD 551 A HEM 600 A
4 1.17 2.51 30.4 -0.11 0.07 8.5 77 3 0 4 7 3 1 0  MXD 551 A HEM 600 A
5 1.41 3.68 32.9 -0.67 0.00 7.8 76 3 0 3 7 3 1 1  MXD 551 A HEM 600 A
6 1.12 2.51 33.8 0.83 0.42 4.7 72 2 1 2 11 3 0 1  HEM 600 A
7 1.17 2.51 39.7 -0.42 0.10 11.8 75 3 1 3 9 4 0 0  MXD 551 A HEM 600 A
8 1.29 1.32 43.6 -0.67 0.04 10.2 76 3 1 4 10 4 0 1  MXD 551 A HEM 600 A
9 1.61 2.14 44.1 -1.30 -0.10 15.0 77 6 0 2 2 5 2 0  MXD 551 A HEM 600 A BOG 701 A
10 1.41 3.59 49.0 -0.53 0.14 10.2 72 4 0 2 6 5 1 1  MXD 551 A HEM 600 A BOG 701 A
11 1.18 2.50 55.1 -0.32 0.03 8.9 73 4 0 3 7 6 1 0  MXD 551 A HEM 600 A BOG 701 A
12 1.30 1.32 57.0 -1.27 -0.04 17.2 80 7 1 3 5 6 0 0  MXD 551 A HEM 600 A BOG 701 A

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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