PDBsum entry 3b5b Go to PDB code:  Tunnel analysis for: 3b5b calculated with MOLE 2.0 PDB id 3b5b Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   6 tunnels, coloured by tunnel radius 6 tunnels, coloured by tunnel radius 6 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.11 2.61 37.4 0.90 0.79 5.3 64 2 1 0 5 5 0 1  NDU 265 A 2 1.12 2.62 38.0 0.78 0.73 4.1 64 0 2 0 5 5 0 1  NDU 265 A 3 1.11 2.63 38.0 -0.36 0.53 13.3 67 4 1 2 2 6 0 1  NDU 265 A 4 1.17 1.41 30.7 0.29 0.72 5.5 58 1 1 1 2 5 0 1  NDN 265 B 5 1.33 2.19 36.6 0.74 0.63 7.0 66 2 1 1 5 6 0 1  NDN 265 B 6 1.33 2.18 38.3 -0.87 0.30 16.6 70 4 2 3 2 6 0 1  NDN 265 B Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.