PDBsum entry 3b5a Go to PDB code:  Tunnel analysis for: 3b5a calculated with MOLE 2.0 PDB id 3b5a Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   5 tunnels, coloured by tunnel radius 5 tunnels, coloured by tunnel radius 5 tunnels, coloured as in list below Tunnels Length Hydropathy Hydrophobicity Polarity Mutability Residue..type Ligands Radius 1 1.62 20.8 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  4 C A,5 A2M A,6 G A,7 U A,5 U B,6 G B,8 G B,9 A B, 26 A B,38 G C 2 1.60 26.1 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  2 C A,3 C A,4 C A,5 A2M A,6 G A,7 U A,7 A B,8 G B, 9 A B,10 A B,26 A B,38 G C 3 1.60 27.4 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  1 U A,2 C A,4 C A,5 A2M A,6 G A,7 U A,103 SO4 A,8 G B,9 A B,10 A B,26 A B,38 G C 4 2.04 11.7 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  23 A B,24 A B,25 C B,34 U C,35 G C,36 G C 5 1.45 21.3 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  22 A B,23 A B,24 A B,25 C B,35 G C,36 G C,39 C C Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program and visualized using Pymol 0.97rc.