PDBsum entry 3b3d Go to PDB code:  Tunnel analysis for: 3b3d calculated with MOLE 2.0 PDB id 3b3d Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   5 tunnels, coloured by tunnel radius 5 tunnels, coloured by tunnel radius 5 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.38 1.38 21.6 -2.69 -0.66 27.9 81 5 2 2 0 0 1 0   2 1.37 1.41 33.7 -2.30 -0.68 26.1 80 5 3 2 0 1 1 0   3 1.37 1.43 35.5 -1.48 -0.48 21.1 87 4 4 3 3 0 1 0   4 1.42 2.00 16.3 -0.80 0.65 15.4 73 3 1 2 2 3 1 0   5 1.61 1.66 15.5 -1.45 -0.15 10.7 69 1 1 4 1 3 2 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.