PDBsum entry 3amq Go to PDB code:  Tunnel analysis for: 3amq calculated with MOLE 2.0 PDB id 3amq Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   3 tunnels, coloured by tunnel radius 3 tunnels, coloured by tunnel radius 3 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.64 3.66 18.4 -1.62 0.19 20.5 59 1 2 0 2 6 0 0  BGC 902 B GLC 1 F 2 1.62 3.65 24.3 -2.06 0.29 24.7 55 1 3 0 1 5 0 0  GLC 1 F BGC 2 F 3 1.20 1.32 16.0 -0.47 -0.14 10.6 73 2 0 1 3 0 2 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.