PDBsum entry 3am4 Go to PDB code:  Tunnel analysis for: 3am4 calculated with MOLE 2.0 PDB id 3am4 Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   2 tunnels, coloured by tunnel radius 4 tunnels, coloured by tunnel radius 4 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.12 1.29 30.0 -0.39 -0.17 11.4 82 3 0 3 5 2 0 0  NAD 801 A FT1 802 A 2 1.11 1.30 31.0 0.41 0.10 9.0 84 2 0 2 8 2 0 0  NAD 801 A FT1 802 A 3 1.12 1.31 38.8 -0.32 0.22 11.9 74 4 0 2 7 5 1 0  NAD 801 A FT1 802 A 4 1.12 1.34 42.5 -0.53 -0.19 11.2 80 3 2 3 6 2 0 0  NAD 801 A FT1 802 A Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.