PDBsum entry 3akm Go to PDB code:  Tunnel analysis for: 3akm calculated with MOLE 2.0 PDB id 3akm Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   0 tunnels, coloured by tunnel radius 3 tunnels, coloured by tunnel radius 3 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.95 2.27 35.4 -0.13 0.27 9.7 72 2 3 3 7 6 0 0  11D 132 B 2 1.66 1.67 39.0 0.25 0.43 8.8 70 2 1 2 9 6 0 0  11D 132 B 3 1.62 1.62 46.5 -0.45 0.16 9.2 74 3 1 3 8 6 0 0  11D 132 B Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.