PDBsum entry 3ajh Go to PDB code:  Tunnel analysis for: 3ajh calculated with MOLE 2.0 PDB id 3ajh Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   12 tunnels, coloured by tunnel radius 7 tunnels, coloured by tunnel radius 7 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.12 1.21 22.8 -0.74 -0.02 13.1 82 2 2 2 3 2 0 0  BL3 250 A 2 1.24 1.24 25.1 -0.27 0.09 10.2 83 2 2 4 4 3 0 0  BL3 250 A 3 1.15 2.85 27.3 0.41 0.39 5.9 69 0 2 3 3 4 1 1  BL3 250 A 4 1.26 2.11 20.1 -0.92 -0.14 9.9 79 2 1 3 1 2 0 1  BL3 250 B 5 1.23 1.77 26.9 -1.16 -0.07 16.3 83 3 1 3 2 2 0 1  BL3 250 B 6 1.17 1.18 25.8 -0.72 -0.38 9.7 78 3 0 2 3 2 1 0   7 1.33 1.54 15.2 -0.78 -0.48 4.3 66 0 1 1 1 0 2 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.