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PDBsum entry 3afb

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Top Page protein ligands metals Protein-protein interface(s) pores links
Pore analysis for: 3afb calculated with MOLE 2.0 PDB id
3afb
Pores calculated on whole structure Pores calculated excluding ligands

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5 pores, coloured by radius 4 pores, coloured by radius 4 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 2.86 3.04 34.2 -0.83 -0.27 17.8 78 0 7 0 7 2 3 0  GOL 718 A
2 1.93 1.94 41.8 -0.76 -0.39 14.6 87 2 6 4 4 1 3 0  
3 1.94 1.94 43.2 -0.57 -0.31 14.2 87 2 7 4 5 1 3 0  GOL 718 A
4 2.89 3.06 44.3 -1.10 -0.27 18.0 78 0 8 0 6 2 4 0  GOL 718 A

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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