PDBsum entry 3ae5 Go to PDB code:  Tunnel analysis for: 3ae5 calculated with MOLE 2.0 PDB id 3ae5 Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   5 tunnels, coloured by tunnel radius 5 tunnels, coloured by tunnel radius 5 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.17 1.17 79.6 -0.61 -0.17 13.3 85 6 4 6 9 8 0 0  FAD 700 A 2 1.17 1.17 81.4 -0.67 -0.15 14.8 85 8 5 7 10 6 0 0  FAD 700 A 3 1.17 1.19 102.8 -0.49 -0.07 13.2 81 6 6 5 13 9 1 0  FAD 700 A 4 1.08 1.26 29.2 -1.10 -0.46 14.0 82 3 2 3 3 1 0 0   5 1.11 1.25 35.2 -0.69 -0.47 9.2 85 2 2 4 4 1 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.